Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04467 ATGGCTACCCCAAGTAAGTCAGCACCAATAATGTCTTCAGACTCCTTGGAACAGAAAGGGAAAAATATTACTGAATCAAATGTAAACATGCTTCAATGTCCTTTAAACCTGCAACACCATAGCTCCTTAGATGGCCCGGTAGCTATACTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGGCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTGCGGGTGCACCCGGTAATTAAAGGAGCTGTTATGATGTTTTCCGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTCGAGAGGGATGTCAGAGAACTGGTGTTAAACTCATTGATGTTCCCAATGGAAGAAAAGATGCTGCCGACAAAGCTATCTTGGTTGACATGTTCTTATTTGCCCTTGACAACCGTCCACCTTCCTCTATCATGCTAATATCTGGAGATGTTGATTTTGCTCCTGCACTTCACATTCTCGGTCAGCGGGGTTATACTGTAGTTCTTGTCATCCCTGCTGGTGTGGGTGTTTCTTCTGCCTTATGCAATGCTGGTAAATTTGTCTGGGATTGGCCTAGTGTGGCTCGTGGAGAAGGCTTTGTTCCCCCCTCAAAGGCTTTAGTGCCACCCCGTGGAGGATCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGACAACTCCGATGCACAAAATGAAGAAGAATCAATAGTTTATAGAGGGATGTCACAGAGCTATTATAACTCAAGTGGTTTCTCTATGGTCTCACAATCTCTGTCTGAATACAACTCATCAAACATGCCTTTCTCGCCAACTGTGAGATCACATAGTCTTCCGTCTGGATTGAATGATGTTGCAGGAGGACCTATGCCTTCTAGTGACCACACTGAATGCCAGATATGGGTTCAGCCAGGAGATTTAAATGGTCTAAAGGGCCAACTGGTAAGGTTACTTGAGCTGTCTGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAATGAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATACCATGGCTGTAGAAGGGAAAGGGCATCGTAAATTTGTGTATCTCAGAAACTGGAAGGCATGCCCAAGTGCTCCTCCGCTGTCTCCTGCAAAGAAAGATAAGAAAGGAAAAGGGGCACAGGAAGAGAATGCAAATGTTGTCACTGGTGGCTGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATTGAAGAACACGATGAGAGAAGTTGCACAGGAAAGGGCAATCAGGGGAGAGCAGCTAGGTGTGAAGTTGATGACCGTATTATTGAGCAGTTCAAGTATGAGCTGCAAGAGATTCTAGTCAGTTATTCTTGTCGAATATTCCTAGGTTGTTTTGAGGCTATATACCAGCAACGGTACAAGAGACAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAAAGATGTGGTAGTATTGCATGAGGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGAGTGGTTAG 1587 0.4455 MATPSKSAPIMSSDSLEQKGKNITESNVNMLQCPLNLQHHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNRPPSSIMLISGDVDFAPALHILGQRGYTVVLVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGGSIELAGYLMGCHINDNSDAQNEEESIVYRGMSQSYYNSSGFSMVSQSLSEYNSSNMPFSPTVRSHSLPSGLNDVAGGPMPSSDHTECQIWVQPGDLNGLKGQLVRLLELSGGCLPLARVPAEYQKIYGRPLYVAEYGAMKLVNLFKKMGDTMAVEGKGHRKFVYLRNWKACPSAPPLSPAKKDKKGKGAQEENANVVTGGCSSDEFSDEERVVIEEHDERSCTGKGNQGRAARCEVDDRIIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKRQLEYQRFGVDKLEDLLEKVKDVVVLHEEPVSKRKFLAAVSG. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04467 528 CDD PIN_limkain_b1_N_like 46 172 - -
Seca12g04467 528 Gene3D - 42 192 - -
Seca12g04467 528 CDD LOTUS 309 378 - -
Seca12g04467 528 CDD LOTUS 454 516 - -
Seca12g04467 528 PANTHER LIMKAIN B LKAP 26 492 IPR024768 GO:0005777|GO:0010468
Seca12g04467 528 ProSiteProfiles OST-type HTH domain profile. 453 527 IPR025605 -
Seca12g04467 528 Pfam NYN domain 46 186 IPR021139 GO:0004540
Seca12g04467 528 Gene3D - 308 377 IPR041966 -
Seca12g04467 528 Gene3D - 449 520 IPR041966 -
Seca12g04467 528 ProSiteProfiles OST-type HTH domain profile. 308 380 IPR025605 -
Seca12g04467 528 MobiDBLite consensus disorder prediction 388 407 - -
Seca12g04467 528 Pfam OST-HTH/LOTUS domain 454 516 IPR025605 -
Seca12g04467 528 Pfam OST-HTH/LOTUS domain 310 376 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04467 Seca-Chr12 121550168 121553687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04467 43 197 C2H2 Transcription Factor Family AT5G61190 41.290 7.31e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04467 - - gmx:100818186 929.472