Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04466 ATGCTAGTTTCAGAGTCATCCCCATCCTTGCATGCTCCTGAGGCTTCTCCAAGTCCACTGGTTGCTGATAGCCCAAGTCAACTGATGTTAGGTGTACCTTCTAAAGGAAACCACCATTCATATCACTTGACATTAGTTCCATGTATTGCTATTGCAGTTACAGCTGTTGCTGTTATGGCACTCATAGTCTTGATAGTTCTAATTCGCCAGAAACGTAGAGAGTTAGATGACGAGCCTGATAATTTTGGTAAAACCAGTTCGAAAACCTTACCTCCTTGTGCAACATGGAAATTTCAGGAAGGTTCTTCATCTATGTTCCGAAAATTCAACTACACTGAGATAAAGAAGGCAACAGAGGGTTTTACAACCATCATTGGCCAAGGGGGATTTGGAACAGTGTATAAAGCTCATTTTAGTGATGGCATGGTGGCTGCAGTAAAGCGGATGAACAGAGTCTCAGAACAGGGGGAGGATGAGTTCTGCAGGGAAATTGAACTTCTTGCTCGGCTGCACCATCGGCATCTTGTTTCTTTAAGAGGCTTTTGTGTCAAAAAACATGAGAGGTTTCTGTTGTATGAGTACATGGGAAATGGAAGCTTAAAAGATCATCTTCATTCCCCTGGTAAAACACCTTTAAGTTGGCGAACTAGAATCCAAATTGCCATTGACGTGGCTAATGCACTGGAGTACCTTCATTTCTATTGTGATCCTCCTCTATGTCACAGAGATATTAAATCTAGCAACACTTTATTGGATGGGAACTTGGTTGCTAAGATAGCTGATTTTGGCCTTGCACAAGCTTCTAAAGATGGTTCCATATGCTTTGAACCTGTAAATACCGAAATCCGAGGAACTCCTGGTTATATGGATCCTGAATATGTTGTTACTCAAGAGCTCACTGAGAAAAGTGATATATACAGTTTTGGGGTGTTATTACTGGAAATTGTGACAGGAAGACGAGCTATTCAAGATAATAAAAATTTGGTAGAATGGGCCCAACCATACATGGAATCAGAAACTAGATTATTAGAGTTAGTAGATCCCAATGTGAGGGAGTCTTTTGACTTGGATCAGCTTCAAACAGTAGTCTCTATAGTAGGATGGTGCACTCAGAGAGAAGGGAGGGCAAGGCCTTCAATAAAACAGGTCCTTAGGCTTTTGTATGAGACATCAGAGCCATTGCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCAGAGAGGCAGAAGAAGCAAAGGGAAAATGCTCAGAAATGAAGCCAATTTTCTCAGCGGGGATGGAAGATATCTTGCTTCATCTTCAAGTACATCTCGGTCATATTGCAGTAGAAGCTTTTTACTTGAGACTGGCTCTCCACAGTCCCCAACAAATGTATTCTCAGTCTGA 1404 0.4174 MLVSESSPSLHAPEASPSPLVADSPSQLMLGVPSKGNHHSYHLTLVPCIAIAVTAVAVMALIVLIVLIRQKRRELDDEPDNFGKTSSKTLPPCATWKFQEGSSSMFRKFNYTEIKKATEGFTTIIGQGGFGTVYKAHFSDGMVAAVKRMNRVSEQGEDEFCREIELLARLHHRHLVSLRGFCVKKHERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDGNLVAKIADFGLAQASKDGSICFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESETRLLELVDPNVRESFDLDQLQTVVSIVGWCTQREGRARPSIKQVLRLLYETSEPLHSEFLQAVEDEECQGSQQRGRRSKGKMLRNEANFLSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPTNVFSV. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04466 467 FunFam Putative receptor-like protein kinase 195 395 - -
Seca12g04466 467 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04466 467 SMART serkin_6 119 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04466 467 FunFam Putative receptor-like protein kinase 87 194 - -
Seca12g04466 467 SUPERFAMILY Protein kinase-like (PK-like) 101 389 IPR011009 -
Seca12g04466 467 PANTHER OS01G0750732 PROTEIN 14 407 - -
Seca12g04466 467 ProSitePatterns Protein kinases ATP-binding region signature. 125 147 IPR017441 GO:0005524
Seca12g04466 467 CDD STKc_IRAK 125 387 - -
Seca12g04466 467 Gene3D Phosphorylase Kinase; domain 1 91 194 - -
Seca12g04466 467 Gene3D Transferase(Phosphotransferase) domain 1 195 412 - -
Seca12g04466 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Seca12g04466 467 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g04466 467 ProSiteProfiles Protein kinase domain profile. 119 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04466 Seca-Chr12 121546555 121549130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04466 20 466 Receptor kinase-like Gene Family AT3G19300 64.523 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Seca12g04466 Pkinase 5.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04466 - - gmx:100807955 808.905