Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04459 ATGAAAAGGCAGAGACTCATTATCCATCGTTACATTAAGTCTAGTAACATAATGCTTTTCAATGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCCCGTGTTCTTGGAACCTTTGGATATCATGCTCTAGAGTACGTTATCACATACTTTAAGTTTCAATTTATTTGA 189 0.3492 MKRQRLIIHRYIKSSNIMLFNDDVAKIADFDLSNQAPDARVLGTFGYHALEYVITYFKFQFI. 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04459 62 Gene3D Transferase(Phosphotransferase) domain 1 1 59 - -
Seca12g04459 62 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 55 - -
Seca12g04459 62 ProSiteProfiles Protein kinase domain profile. 1 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04459 62 SUPERFAMILY Protein kinase-like (PK-like) 5 56 IPR011009 -
Seca12g04459 62 Pfam Protein kinase domain 5 53 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04459 Seca-Chr12 121475263 121475451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04459 4 55 Receptor kinase-like Gene Family AT4G02010 50.847 2.92e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca12g04459 Pkinase 9.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04459 K13436 - gmx:547595 85.8853