Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04457 ATGAAAAGGCAGAGACTCATTATCCATCGTTACATTAAGTCTAGTAACATAATGCTTTTTGATGATGATGTTGCAAAGATTGCTGGTTTTGATTTGTCAAATCAAGCCCCTGATGCCTGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAACTCACTTCAAAAAGTGATGTTTACAGTTTTGGAGTTATATTGCTGGAACTCTTAACCGGGCGTAAACCTGTTGCTGTTGCTGGCCATTAA 261 0.3946 MKRQRLIIHRYIKSSNIMLFDDDVAKIAGFDLSNQAPDACVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVAVAGH. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04457 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04457 86 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 81 - -
Seca12g04457 86 Pfam Protein kinase domain 5 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04457 86 Gene3D Transferase(Phosphotransferase) domain 1 1 86 - -
Seca12g04457 86 SUPERFAMILY Protein kinase-like (PK-like) 6 81 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04457 Seca-Chr12 121411859 121412361 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04457 4 81 Receptor kinase-like Gene Family AT4G02010 60.000 3.51e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca12g04457 Pkinase 2.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04457 K13436 - gmx:547595 139.043