Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04455 ATGCGTGCCAATTTAGAACCGTTGGATTTGGGGATTCAGATACCCTACCACTTCAGGTGCCCAATCTCTCTTGAGCTTATGCGTGACCCTGTCACGGTGTGCACCGGTCAAACCTACGACCGTGGCAGCATCGAGTCATGGGTGAACACAGGCAACACCACGTGCCCCGTCACGCGAGCACCTCTCACTGACTTCACCCTAATCCCAAACCACACCCTTCGCCGCCTCATCCAAGAGTGGTGCGTTGCCAACCGCGCTTTTGGCGTTGAGCGTATCCCCACTCCCAAACAGCCCGCAGACCCTGCCCTCGTTCGCTCTTTGCTCAACCAATGTTCTTCAGATTCTGCCCCCACTCACCTCCGCCTCAACTCGCTTCGTCGACTCAGACAACTCGCCCGTGACTCAGACTATAACCGCTCCCTCATTGCCTCTCACAACGTTCGCCACATCTTACTCCCTATCCTCTTCAACCACCACGGTTCGGATGAGTTGAAGCACGAGTCACTGGCTCTACTCGTTCTTTTCCCACTCGGAGAGTCAGATTGCGCGTCACTAGCTTCCGATTCAGATAAGATCAACTACCTCACGCGTCTTCTTTCTCATCCTTCGCTCGATGTCCGAGTCAACTCAGCCGCGCTCATTGAGATCGTTGTCGCCGGGACTCACTCACCGGAGCTTCGCGCTCAGGTGAGCAATGTCGACGGGATCCACGACGGCGTGGTGGAGATACTCCGGAGTCCGATCTCGTACCCGCGCGCGATGAAGGTTGGGATCAAGGCCTTGTTCGCGCTCTGCTTGGTGAAGCAGACGCGGCACAGGGCGGTGGTGGCTGGAGCACCGGCGGTGCTCGTCGACCGGCTCCCGGACTTTGAAAAATGCGACGCGGAGAGGGCGCTGGCGACGGTGGAGCTTCTCTGCCGGATTCCGGGGGGATGCGCGGCCTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATACTGAAGATATCGGATCGAGCGACGGAGTACGCTGCCGGAGCGTTGCTGTCGCTGTGCTCGGAATCGGAGAAGTGCCAGAGGGAGGCGGTGACGGCGGGGGTGCTGACTCAGCTTCTGCTTCTGGTACAAAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCCATCGGAAATTCTGACGATTTTGCGTGCAGCCAGGTTGTTGTGGTGCCCTTTTGA 1248 0.5809 MRANLEPLDLGIQIPYHFRCPISLELMRDPVTVCTGQTYDRGSIESWVNTGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQCSSDSAPTHLRLNSLRRLRQLARDSDYNRSLIASHNVRHILLPILFNHHGSDELKHESLALLVLFPLGESDCASLASDSDKINYLTRLLSHPSLDVRVNSAALIEIVVAGTHSPELRAQVSNVDGIHDGVVEILRSPISYPRAMKVGIKALFALCLVKQTRHRAVVAGAPAVLVDRLPDFEKCDAERALATVELLCRIPGGCAAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESEKCQREAVTAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQVVVVPF. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04455 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Seca12g04455 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Seca12g04455 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Seca12g04455 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Seca12g04455 415 Gene3D - 93 404 IPR011989 -
Seca12g04455 415 SUPERFAMILY RING/U-box 12 90 - -
Seca12g04455 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Seca12g04455 415 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Seca12g04455 415 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Seca12g04455 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04455 Seca-Chr12 121292768 121294015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04455 1 415 U-box Gene Family AT3G19380 66.903 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04455 - - var:108341190 711.449