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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Seca12g04450
ATGACATTAGAAGATGAAGGTGGCTCCAATGTGGGCTTCTTGTCTGATCATAACGACGCAGAGAAGATGATAAGCAACAACCAAAATGGATCAGAATTAGGAATTGTTGTGTTGGATAATAAGCAATCACTAAAAGGGAAGAATGTTGCAGTTGCTACTAAAGATCAAGGGAATGATATTAATGATGGAAACACTACTCGTGATGCTGCTCATATATGGACTGAGAGAGAAAGAAGGAAGAAAATGAAGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCAAAGGCGGATAAATCAATCGTTGTAGATGAAGCAGTGAGCTACATACAAAATCTTGAGCAAACTCTTGAAAAGCTAGAGAAGTAG
378
0.3889
MTLEDEGGSNVGFLSDHNDAEKMISNNQNGSELGIVVLDNKQSLKGKNVAVATKDQGNDINDGNTTRDAAHIWTERERRKKMKNMFSTLHSMLPHLPPKADKSIVVDEAVSYIQNLEQTLEKLEK.
126
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Seca12g04450
125
SMART
finulus
74
122
IPR011598
GO:0046983
Seca12g04450
125
SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain
64
124
IPR036638
GO:0046983
Seca12g04450
125
ProSiteProfiles
Myc-type, basic helix-loop-helix (bHLH) domain profile.
66
116
IPR011598
GO:0046983
Seca12g04450
125
CDD
bHLH_AtbHLH_like
71
124
IPR045239
-
Seca12g04450
125
Gene3D
-
58
125
IPR036638
GO:0046983
Seca12g04450
125
Pfam
Helix-loop-helix DNA-binding domain
69
117
IPR011598
GO:0046983
Seca12g04450
125
PANTHER
BHLH DOMAIN-CONTAINING PROTEIN
40
125
IPR044278
GO:0003700|GO:0006355|GO:0009960
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Seca12g04450
Seca-Chr12
120899449
120900726
Proximal
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Seca12g04450
71
124
Basic Helix-Loop-Helix Transcription Factor Gene Family
AT1G49770
77.778
1.79e-25
95.9
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
bHLH
Seca12g04450
HLH
4.9e-10
No_clan
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Seca12g04450
-
-
gmx:102665879
109.383
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