Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04450 ATGACATTAGAAGATGAAGGTGGCTCCAATGTGGGCTTCTTGTCTGATCATAACGACGCAGAGAAGATGATAAGCAACAACCAAAATGGATCAGAATTAGGAATTGTTGTGTTGGATAATAAGCAATCACTAAAAGGGAAGAATGTTGCAGTTGCTACTAAAGATCAAGGGAATGATATTAATGATGGAAACACTACTCGTGATGCTGCTCATATATGGACTGAGAGAGAAAGAAGGAAGAAAATGAAGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCAAAGGCGGATAAATCAATCGTTGTAGATGAAGCAGTGAGCTACATACAAAATCTTGAGCAAACTCTTGAAAAGCTAGAGAAGTAG 378 0.3889 MTLEDEGGSNVGFLSDHNDAEKMISNNQNGSELGIVVLDNKQSLKGKNVAVATKDQGNDINDGNTTRDAAHIWTERERRKKMKNMFSTLHSMLPHLPPKADKSIVVDEAVSYIQNLEQTLEKLEK. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04450 125 SMART finulus 74 122 IPR011598 GO:0046983
Seca12g04450 125 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 124 IPR036638 GO:0046983
Seca12g04450 125 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 116 IPR011598 GO:0046983
Seca12g04450 125 CDD bHLH_AtbHLH_like 71 124 IPR045239 -
Seca12g04450 125 Gene3D - 58 125 IPR036638 GO:0046983
Seca12g04450 125 Pfam Helix-loop-helix DNA-binding domain 69 117 IPR011598 GO:0046983
Seca12g04450 125 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 40 125 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04450 Seca-Chr12 120899449 120900726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04450 71 124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 77.778 1.79e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g04450 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04450 - - gmx:102665879 109.383