Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04447 ATGATAAGCAACAACCAAAATGGATCAGAATTAGGAATTGTTGTGTTGAATAATAAGCGATCACTAAAAGGGAAGAATGTTGCAGTTGCTACTACAGATCAAGGGAATGACATTAATGATGGAAACACTACTCGTGATGCTGGTCATATATGGACTGAGAGAGAAAGAAGGAAGAAAATGAAGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCAAAGGCGGATAAATCAACCGTTGTAGATGAAGCAGTGAGTTACATACAAAATCTTGAGCAAACTCTTGAAAAGCTAGAGAAGCAGAAACAAGAAAGGCTCCAATATGTGTCCACCAATACTACTTTTGGGTGTGACTCATCTGTGATACACTCACAGTCAATGTGGCATCCCTATGACCCACCCTTGATAACGACTGGTGATAAAGGATCATCTTCCAATAACAACTACTTGTCCAATATTACTACAGTAAATGGAACTTCAAACATAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAGATGTAGCACAATTCTGTATATGTGCAACGAAGAAGCCTGGTATCTTGACCACCATCACTTATGTGCTCGAGAAGTACAACATTGAGGTCCTATCTGCCAACATTTTGTCCAGTAATGGAGATGCATACATGATTCAAGCCCATGTAAGTTTCAAACTCCACCCCCACTTTATATATCATTTTGTCATATTATATATGCTTCTGAGTCATTCATAA 759 0.3847 MISNNQNGSELGIVVLNNKRSLKGKNVAVATTDQGNDINDGNTTRDAGHIWTERERRKKMKNMFSTLHSMLPHLPPKADKSTVVDEAVSYIQNLEQTLEKLEKQKQERLQYVSTNTTFGCDSSVIHSQSMWHPYDPPLITTGDKGSSSNNNYLSNITTVNGTSNIAFQTWTSPNVVLNIYGDVAQFCICATKKPGILTTITYVLEKYNIEVLSANILSSNGDAYMIQAHVSFKLHPHFIYHFVILYMLLSHS. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04447 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Seca12g04447 252 Pfam Helix-loop-helix DNA-binding domain 50 95 IPR011598 GO:0046983
Seca12g04447 252 Coils Coil 84 111 - -
Seca12g04447 252 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 32 231 IPR044278 GO:0003700|GO:0006355|GO:0009960
Seca12g04447 252 Gene3D - 37 110 IPR036638 GO:0046983
Seca12g04447 252 SMART finulus 52 100 IPR011598 GO:0046983
Seca12g04447 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 110 IPR036638 GO:0046983
Seca12g04447 252 CDD bHLH_AtbHLH_like 49 102 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04447 Seca-Chr12 120782564 120784545 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04447 36 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 45.740 6.34e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g04447 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04447 - - rcu:8275281 203.756