Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04445 ATGACATTAGAAGATGAAGGTGGCTCAATTGTGGGCTTCTTGTCTGATCATAACGACGCGGAGAAGATGATAAGCAACAACCAAAATGGATCAGAATTAGGAATTGTTGTGTTGAATCATAAGCGATCACTAAAAGAGAAGAATGTTACAGTTGCTACTACAGATCAAGGGAATGATATTAATGATGGAAACACTACTCGTGATGCTGGTCATATATGGACTGAGAGAGAAAAAAGGAAGAAAATGAAGAACATGTTCTCTACCTTTCATTTTATGCTTCCTCACCTTCCTCCAAAGGTAATTCAATTCATCTTTATTCTTCCATCAAACCATCAATTCAATGAAGCAGTGAGCTACATACAAAATCTTGAGCAAACTCTTGTAAAGTTAGAGAAGCAGAAACAAGAAAGGCTCCAATATGTGTCCACCAATGCTACTTTTGGGTGTGACTCATCTGTGATACACTCACGGTCACTGTGGCATCCCTATGACCCACCCTTGATAACTGCTGGTGATAAAGGATCATCTTCCAATAACAACTACTTGTCCAATATTACTGCAGTAAATGGAACTTCAAACAATAATGGATTACAGCCTGCAGTAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAGATGTAGCACAATTCTGCATATGTGCAACCAAGAAGCTTGGCATCTTGACCACCATCACTTATGTGCTTGAGAAGTACAACATTGAGGTCCTATCTGCCAACATTTTGTCCAGTAATGGAGATGCATACATGATTCAAGCCCATGCAAAACGAGCTTCAAACCAGTTCCAAGAAGCAAAATTAGTGGAGCAAATGCATAGGCAAGCAGCGAGGGAGATCACCCTATGGATCGCCTAA 888 0.3986 MTLEDEGGSIVGFLSDHNDAEKMISNNQNGSELGIVVLNHKRSLKEKNVTVATTDQGNDINDGNTTRDAGHIWTEREKRKKMKNMFSTFHFMLPHLPPKVIQFIFILPSNHQFNEAVSYIQNLEQTLVKLEKQKQERLQYVSTNATFGCDSSVIHSRSLWHPYDPPLITAGDKGSSSNNNYLSNITAVNGTSNNNGLQPAVAFQTWTSPNVVLNIYGDVAQFCICATKKLGILTTITYVLEKYNIEVLSANILSSNGDAYMIQAHAKRASNQFQEAKLVEQMHRQAAREITLWIA. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04445 295 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 42 293 IPR044278 GO:0003700|GO:0006355|GO:0009960
Seca12g04445 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 138 IPR036638 GO:0046983
Seca12g04445 295 Coils Coil 113 140 - -
Seca12g04445 295 Gene3D - 60 145 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04445 Seca-Chr12 120762747 120765589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04445 71 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.759 2.23e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04445 - - gmx:102665879 204.142