Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04442 ATGATAAGCATCAACCAAATTGGATCAGAATTAGGAATTGTTGTGGTGAATAATAATAAGCAATCACTAAAAGGGAAGAATGTTGCTGTTGCTACTACTGATCAAGGGAATGATATTAATGATGGAGACACTACTCGCGATACTGCTCATATATGGACTGAGAGAGAAAGAAGGAAGAAAATGAGAAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCTAAGGCAGATAAATCAACCGTTGTGGATGAAGCAGTGAGCTACATACAACATCTTGAGCAAACTCTTGAAAAGCTAGAGAAGCAGAAACAAGAAAGGCTCCAATATGTGTCCACCAATGCTACTTTTGGGTGTGACTCATCTGTGATACACTCACAGTCACAGTGGCATCCCTATGACCCATCATTAATAACTGCTGGTGATCAAGGATCATCTTCCAATAACAACTACTTGTCCAATATTACTGCAGTTAATGGAACTTCAAACAATAATGGATTACAGCCTGCAGTAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAGATGAAGCACAATTCTGCATATGTGCGACCAAGAAGCCTGGCATCTTGACCACCATCGCTTATGTGCTCGAGAAGTACAACATTGAGATCCTATCTGCCAACATTTTGTCCAATAATGGAAATGCATACATGATTCAAGCCCATGTAAGTTTGAAACTCCACCCCCATTTTATATATCATTTTCTTATATTATATATGCTCCTAAGTCATTCATAA 783 0.387 MISINQIGSELGIVVVNNNKQSLKGKNVAVATTDQGNDINDGDTTRDTAHIWTERERRKKMRNMFSTLHSMLPHLPPKADKSTVVDEAVSYIQHLEQTLEKLEKQKQERLQYVSTNATFGCDSSVIHSQSQWHPYDPSLITAGDQGSSSNNNYLSNITAVNGTSNNNGLQPAVAFQTWTSPNVVLNIYGDEAQFCICATKKPGILTTIAYVLEKYNIEILSANILSNNGNAYMIQAHVSLKLHPHFIYHFLILYMLLSHS. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04442 260 CDD bHLH_AtbHLH_like 50 103 IPR045239 -
Seca12g04442 260 Gene3D - 38 111 IPR036638 GO:0046983
Seca12g04442 260 SMART finulus 53 101 IPR011598 GO:0046983
Seca12g04442 260 Pfam Helix-loop-helix DNA-binding domain 48 96 IPR011598 GO:0046983
Seca12g04442 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Seca12g04442 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 110 IPR036638 GO:0046983
Seca12g04442 260 Coils Coil 85 112 - -
Seca12g04442 260 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 26 241 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04442 Seca-Chr12 120722701 120724680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04442 37 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 46.154 7.67e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g04442 HLH 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04442 - - rcu:8275281 210.305