Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04441 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAGCAATTGTTAGCATGATGCAAGGGCCTAGTTCTAGTGGCACAGATATGAATCGTCAGTCTTCCTTGAATCATGTGCAAAATGCAGTTGATTTCCGACTTTCAGATTATAGGGGGTCTTCTGGTGAAACTGCATGTTTACGTGGTAGTGGTACTGGTCCTAATGTGAGCTTGAGTGGCTGGAATACTGGTGAACCTAGTTCTGGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCAGAACATGGGTTATCTTCTTCATGTAGTGCAGCTGCTGAGGATGGTCTCAGATCTGAGGAAAGGCAATTACATGGAAATCAATCTAGAATGTTCCCTTCCTTTTTGCAAGGTTCCGGCTCTAATCATATAACCCAGAATATTAGTCTAGATATGGGGCACATTGCTAGCACTTCTGATCGTGGGAAGGGCAAAGAAATTGGTAGTGGTGCTAGTAACAACAATCCTAGTGGATTAGACAGAGAGAAGACATCATTTGGCAGCGCTTCATGCAGTCATATAGGAACTTCATCTGAAAGCTCTGGATACATGGCATGGGGAGATAGTGCCAGTTCGAGTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTAGGCAACTGTGTACTGGAGGAAGCTCAAGCTCTCTTGTACAATCTGAAAATGGTTACTGGCCTGCTGATTCTGTTGATCTTAATGCTTCTAGCAGCTTAAGTGATTCAACTTTAGAGGATTTTCCTGTTACTAGTCCTCCATTACAGCAGAACACAAGAAATGAAATGAGACAAGAAGCTTCCATTGCATTTCCATCGATTATAAGTGTTGCAGAAAATGGGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATCTACAGCATCAGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTACAAGGCATCATAGTCATTCTTCTCCACATCAAACTCCTGGCTCTCTTTCATTTAATGATTCTTTGGAGTTGAGGTTAACACCTGGAGTAACAGCTGCTAATTCTGGTGCTCAGAACCAGTCACCTGCCCTGCACATGCACCCCTTTCCTTGGAATAGAACTGCTAATCCTAGAGTGGCCAGAGCTTCAACTTATAACTCTGGAGAAAGAGCAGTACGGGAAGATTTTAATTTAAGAATCTTTCCAAGAGATAATACTGAACATCCTATTAATGTGCCTGCATCTTTAGGACATGAACCTACAGGGTGGCATACATCTTCTAGTAACGTGAACAATGCTGGAGGTTTACCTCCTACATCCTGGATTGGATCCAGTTCAAATGTCCACTCATTACCTAATCCCAGCTGGACTTTTAGCCATGACGTCCCTACAGAAAATCTGCAGAGAGTGTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCAGCATCTGGTTCTCATAATGGTCATTCTACCCCCTCTACTTCTGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGCAATCAACCATATCCAAGAACAACATTTTTGATGGAAAGAAGGGGTGGTGATGTTCTCCCTGCTCCTCATTCACTGCGAGCATTAGCCTTTGACAATGAGGGGAGGCGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATCGCTGAAATGCATGACAGGCATAGAGATATGCGCCTTGATGTTGATAACATGTCTTATGAGGAACTATTGGCATTGGAGGAGCGTATAGGAGATGTGAGCACTGGATTGAGTGAGGATATCATTGCTAAGTTGATGAAACAGCGAATTCACGTGTCTTTCATGACAGAGTCTTCTTCAGAGCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAGAATGTTGGTTCACTCGATTGTGGGCATGAGTTCCACAGTAATTGCATCAAGCAGTGGCTAATGCAGAAGAATCTCTGCCCCATTTGCAAAACTACAGCCTTAGCTACATGA 2097 0.4363 MQGQRRTIGSFPAIVSMMQGPSSSGTDMNRQSSLNHVQNAVDFRLSDYRGSSGETACLRGSGTGPNVSLSGWNTGEPSSGLNLINQVNDEGLKSEHGLSSSCSAAAEDGLRSEERQLHGNQSRMFPSFLQGSGSNHITQNISLDMGHIASTSDRGKGKEIGSGASNNNPSGLDREKTSFGSASCSHIGTSSESSGYMAWGDSASSSSLVNWGPSCKRKALEGSSRQLCTGGSSSSLVQSENGYWPADSVDLNASSSLSDSTLEDFPVTSPPLQQNTRNEMRQEASIAFPSIISVAENGERPLRNFDRRITHLQHQESVPLNLTSTGSTRHHSHSSPHQTPGSLSFNDSLELRLTPGVTAANSGAQNQSPALHMHPFPWNRTANPRVARASTYNSGERAVREDFNLRIFPRDNTEHPINVPASLGHEPTGWHTSSSNVNNAGGLPPTSWIGSSSNVHSLPNPSWTFSHDVPTENLQRVSEFSPWSLFPSISSASGSHNGHSTPSTSGPPSFSQGSSSNQPYPRTTFLMERRGGDVLPAPHSLRALAFDNEGRRRLISEIRQVLIAMRRGENLRAEDYMLFDPFLYHGIAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDIIAKLMKQRIHVSFMTESSSELEPCCICQEEYADGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTALAT. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04441 698 SMART ring_2 651 691 IPR001841 -
Seca12g04441 698 MobiDBLite consensus disorder prediction 425 445 - -
Seca12g04441 698 MobiDBLite consensus disorder prediction 427 445 - -
Seca12g04441 698 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 162 696 IPR045191 GO:0061630
Seca12g04441 698 MobiDBLite consensus disorder prediction 255 275 - -
Seca12g04441 698 MobiDBLite consensus disorder prediction 314 346 - -
Seca12g04441 698 MobiDBLite consensus disorder prediction 359 379 - -
Seca12g04441 698 MobiDBLite consensus disorder prediction 148 196 - -
Seca12g04441 698 ProSiteProfiles Zinc finger RING-type profile. 651 692 IPR001841 -
Seca12g04441 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 696 IPR013083 -
Seca12g04441 698 MobiDBLite consensus disorder prediction 313 346 - -
Seca12g04441 698 MobiDBLite consensus disorder prediction 161 196 - -
Seca12g04441 698 FunFam E3 ubiquitin-protein ligase MBR2 618 696 - -
Seca12g04441 698 SUPERFAMILY RING/U-box 632 695 - -
Seca12g04441 698 Pfam Ring finger domain 651 692 IPR001841 -
Seca12g04441 698 MobiDBLite consensus disorder prediction 491 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04441 Seca-Chr12 120711859 120717390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04441 18 698 C3H Transcription Factor Family AT2G15530 38.057 6.49e-117 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04441 - K19041 gmx:100809024 1132.86