Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04439 ATGGCAACCAACGAAGATCAAAAGCAAACTGAATCTGGAAGGCACCAAGAAGTTGGTCACAAGAGCCTTTTGCAGAGTGATGCTCTTTACCAGTATATTCTGGAGACCAGTGTCTACCCAAGAGAACATGAAGCTATGAAAGAGTTGAGGGAATTGACAGCAAAACACCCATGGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTTATCAATGCCAAGAATACCATGGAAATTGGTGTCTATACTGGGTACTCCCTGCTTGCCACTGCCCTCGCTCTTCCTGAAGATGGAAAGGTACATATCAACTATCAACAGCAGAGATTAAGAGACCCAGAAGAATTAAGCCTTTTTTTTTTAATAAAAAGATTTTTTTTCAACAAAACTATTTTCTGA 417 0.4077 MATNEDQKQTESGRHQEVGHKSLLQSDALYQYILETSVYPREHEAMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKVHINYQQQRLRDPEELSLFFLIKRFFFNKTIF. 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04439 138 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g04439 138 Pfam O-methyltransferase 35 108 IPR002935 GO:0008171
Seca12g04439 138 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 26 108 IPR029063 -
Seca12g04439 138 PANTHER O-METHYLTRANSFERASE-RELATED 20 109 - -
Seca12g04439 138 Gene3D Vaccinia Virus protein VP39 12 110 IPR029063 -
Seca12g04439 138 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 22 138 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04439 Seca-Chr12 120553078 120554611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04439 5 107 Monolignol Biosynthesis Gene Families AT4G34050 89.320 2.49e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04439 K00588 - ming:122075864 199.519