Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04436 ATGGCGCAGGCTATAGAGCAGGTTCAGTGTTTCGGGCGCAAGAAGAACGCAGTGGCGGTGACATACTGCAAGCGTGGGAGAGGACTGATCAAGATCAACGGTTGTCCAATCGAGCTGGTCCAACCGGAAATCCTCCGGTTCAAGGCCTTCGAGCCAATCCTCCTCTTGGGGAAGAGTCGCTTCGCCGGCGTCGACATGCGCATCCGCGTCAAGGGCGGTGGACACACCTCCCAGATTTACGCCATCCGTCAGAGCATCGCTAAGGCCCTCGTCGCTTTCTACCAGAAGTACGTTGACGAGCAGAGCAAGAAGGAGATCAAGGATATCCTCGTCCGGTACGATCGCACCTTGCTCGTTGCTGATCCCAGACGCTGCGAGCCCAAGAAGTTCGGTGGTCGTGGTGCTCGCGCTAGGTTCCAGAAGTCTTACCGTTGA 435 0.5724 MAQAIEQVQCFGRKKNAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04436 144 SUPERFAMILY Ribosomal protein S5 domain 2-like 7 144 IPR020568 -
Seca12g04436 144 FunFam 40S ribosomal protein S16 1 144 - -
Seca12g04436 144 ProSitePatterns Ribosomal protein S9 signature. 72 90 IPR020574 GO:0003735|GO:0005840|GO:0006412
Seca12g04436 144 Gene3D - 1 144 IPR014721 -
Seca12g04436 144 Pfam Ribosomal protein S9/S16 12 144 IPR000754 GO:0003735|GO:0005840|GO:0006412
Seca12g04436 144 PANTHER RIBOSOMAL PROTEIN S9 4 141 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04436 Seca-Chr12 120459221 120459655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04436 4 144 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 89.362 2.63e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04436 K02960 - gmx:100779794 278.87