Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04434 ATGGAGATCGCTCACGAGCCACCGCCTTCCCTCGACGGGAGCCCTATCCCCGCCGAGACCCTCGCGAACTCTCCGTCGTCCTCTTCCTCTTGTTCTTCTTCCTCCTCCTCTTCCTCTTCTGCTTCGTCGCCTCGCGACTCGAAGGGAAAGGAGATCGAAGCGACCACGTCGGCGGCGGCGGCGGCGGCGGCGACGGCGCCTCCTTCCAAGTACGATGACGACGAGGAGGAAGAAGAGGACGTTTGCCGGATATGCCGGAACCCTGGTGACGCCGAGAATCCACTCCGGTATCCTTGTGCGTGTAGCGGGAGCATCAAGTTTGTGCATCAAGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGCCAATGCGAGGTCTGCAAACATGCATTCTCTTTCTCTCCTGTTTATGCAGAGAATGCTCCAGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCTTGCCATGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCCTAATTATACCTTTCATAACATTCTGGATATGGCGGTTAGCTTTTGTGAGGAGTTTTGGTGAAGCCCAGAGGTTATTCCTAAGTCATTTATCGACAGCAGTTATTCTGACTGATTGCCTCCATGGTTTCCTACTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGACAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATTGCTAGAAGACCTCCTGGACAAGCCAATCGTAATATTAATGGTGATGGGAATGGTGAAGATGCTGGTGGAGCACAAGGAATTGCAGGGGCGGGTCAAGTGATTAGAAGAAATGCTGAAAATGTTGCTGCAAGGTGGGAGATGCAAGCAGCACGACTAGAGGCTCATGTTGAGCAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAGGATGTACCCTTTGATGAACTCGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCGTTCACTGTGCTGGCAAGTAATATGATTTTCCTTGGAGTTGTAATCTTTGTGCCCTTCTCATTGGGCCGCATCATACTCCATTATCTATCCTGGTTCTTCTCTAATGCTAGCAGTCCTGTGTTGTCAGCAGTGGTCCCTCCTACAGATGCATCTCTTTCCCTGGCAAATATTACTTTAAAAAATGCATTAACAGCTGTTAAAAATTTGTCATCTGATGCTCAAGAAAGTGGGTCAATTGGTAATGTTGCAGAAATGCTGAAAGTGAATGCAAGTGGATTGAGTGAAATGTCAAACAACATAAGTGCATCTATTTCAGCTGATCTCTTGAAAGGAGGGTCAATTGGAACTTCAAGACTTTCTGATGTTACTACTCTGGCTATTGGATATATTTTCATATTTACTCTAATTTTCTGCTACTTTGGAATTGTTGCTTTAATCCGTTACACAAAGGGTGAACCTTTGACTATGGGAAGGTTCTATGGCATTGCTTCAATAGCAGAGACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAAACATTTGATGACCATGGTCAAAGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATTTCCTCTCATGTGTGGGTGGTGGCTCGATGTTTGTACCATACAGATGTTTGGGAAGACAATGGTTCACAGAGCTCAGTTCTTCTCTGCATCTCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTAGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTGCGTAATGGAGTTTTGTACTTCCTTCGGGATCCTGCTGATCCAAACTACAATCCATTCCGTGATCTGATTGATGATCCTGTGCATAAACATGCTCGCAGGGTTCTGTTATCTGTTGCAGTTTATGGCAGTTTGATTGTGATGCTGGTATTTTTGCCAGTCAAACTTGCCATGCGAATGGCACCTTCCATTTTCCCACTTGACATTTCGGTATCTGATCCATTCACCGAAATTCCAGCTGACATGCTACTGTTTCAGATCTGTATACCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATTAAATCCCTACTTCGCTATTGGTTTACAGCAGTTGGTTGGGCGCTTGGTTTAACTGATTTCTTACTGCCTAGACCTGATGACAACGGTAGTCAAGAAAATGGAAATGGCGAGCCGGCTAGGCAGGAAAGGCTACAGATAGTACAAGCAGGGGTGCATGATCAGGGTATCGTGCCATTTGCTGGCGATGATTTGAACAGAGTCATTAATGCAGTGGGAGAACTGAATGCTGGAGATGATTATGATAATGATGAGCAATCTGATTCTGACAGTTATGCCTTTGTGCTTCGCATTGTTCTTTTACTGGTGATTGCTTGGATGACTCTCCTTGTCTTCAACTCTGCCCTGATAGTTGTACCAATTTCACTGGGACGGGCACTTTTCAATTCTATTCCTCGTCTTCCTATAACTCATGGCATCAAATGCAATGATCTGTATGCGTTCATCATCGGAAGCTATGTGATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATTGAGCAGATTAGAAAAAGGAGAACTTCAGTTTTGTTAGGCCAAATATGGAAGTGGGTTGGCATTGTTTTTAAGAGTTCTGCACTTCTGTCTATATGGATATTTGTCATCCCAGTGCTGATTGGGCTTCTCTTTGAGCTTTTAGTCATTGTGCCAATGAGAGTTCCAGTGGATGAAAGTCCAGTATTCCTCCTTTATCAAGACTGGGCATTAGGTCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAAAGTTGGCGAGTAAAATTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGCTGCAAGGTCTTTGGGTCCTTCGGGAGATTGTACTTCCAATCATAATGAAACTATTGACAGCATTGTGTGTACCTTACGTATTGGCCAGGGGTGTGTTTCCAGTGCTTGGGTACCCCTTGGTAGTCAATTCTGCTGTCTATCGGTTTGCATGGTTGGGATGCCTGTCTTTCAGTTTCTTGTGCTTTTGTGCCAAGAGATTTCACGTTTGGTTCACAAATCTCCACAATTCAATACGTGATGACCGATATCTGATTGGCCGGAGGTTGCATAACTTTGGAGAAACTGTTGAGAAGGCAAATGAAGCAGGAACTTCTACAGGGATGCAGGATACTATTTTACTAGATCCAAGTTCAAACCAACAAGATCGTGAAGTAGATGTTGGACTACGGTTGCGGCGCTTAAATCAACAGGTTGGCTGA 3390 0.4463 MEIAHEPPPSLDGSPIPAETLANSPSSSSSCSSSSSSSSSASSPRDSKGKEIEATTSAAAAAAATAPPSKYDDDEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARIARRPPGQANRNINGDGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSNASSPVLSAVVPPTDASLSLANITLKNALTAVKNLSSDAQESGSIGNVAEMLKVNASGLSEMSNNISASISADLLKGGSIGTSRLSDVTTLAIGYIFIFTLIFCYFGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMKHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRAQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDNGSQENGNGEPARQERLQIVQAGVHDQGIVPFAGDDLNRVINAVGELNAGDDYDNDEQSDSDSYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRTSVLLGQIWKWVGIVFKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLSFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGETVEKANEAGTSTGMQDTILLDPSSNQQDREVDVGLRLRRLNQQVG. 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04434 1129 MobiDBLite consensus disorder prediction 251 285 - -
Seca12g04434 1129 PANTHER SSM4 PROTEIN 63 1085 - -
Seca12g04434 1129 SUPERFAMILY RING/U-box 77 132 - -
Seca12g04434 1129 CDD RING_CH-C4HC3_MARCH6 81 130 - -
Seca12g04434 1129 ProSiteProfiles Zinc finger RING-type profile. 82 129 IPR001841 -
Seca12g04434 1129 MobiDBLite consensus disorder prediction 17 45 - -
Seca12g04434 1129 Coils Coil 299 319 - -
Seca12g04434 1129 SMART ringv_2 81 129 IPR011016 GO:0008270
Seca12g04434 1129 ProSiteProfiles Zinc finger RING-CH-type profile. 74 135 IPR011016 GO:0008270
Seca12g04434 1129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 140 IPR013083 -
Seca12g04434 1129 MobiDBLite consensus disorder prediction 1 75 - -
Seca12g04434 1129 Pfam RING-variant domain 82 128 IPR011016 GO:0008270
Seca12g04434 1129 FunFam Probable E3 ubiquitin ligase SUD1 67 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04434 Seca-Chr12 120397053 120404902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04434 14 134 C3H Transcription Factor Family AT4G00335 26.357 6.84e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04434 K10661 - gmx:100811171 2002.64