Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04423 ATGCATGAAAACAAAGGGTATGGAAACTTCTCTACCATTCATTTCGCCATTGATTCAGTTCCTTCCAGCAACAAGTATTGGGTTTCCATCAAGGTGAAGGCAGGAACCTACAGTGAAAAAGTGAACATTCCTGCTGATAATCCTTACATCATACTAAAAGGAGAGGGAAAGAGGAAAACTCTTGTTGATTGGGATGACCATGATACAACCTCATAG 216 0.4028 MHENKGYGNFSTIHFAIDSVPSSNKYWVSIKVKAGTYSEKVNIPADNPYIILKGEGKRKTLVDWDDHDTTS. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04423 71 SUPERFAMILY Pectin lyase-like 4 67 IPR011050 -
Seca12g04423 71 Gene3D - 2 71 IPR012334 -
Seca12g04423 71 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 69 - -
Seca12g04423 71 Pfam Pectinesterase 5 63 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04423 Seca-Chr12 120097473 120098176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04423 6 66 Carbohydrate Esterase AT5G47500 40.984 2.67e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04423 - - gmx:100819252 112.464