Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04416 ATGGGAACCAAATCCCTTTCTTTTTCATTCTTAGCTTTCACTTTCTTACTTGCTGTTACTTCCCAAGAGCTAGCAGGTTCAGAAAGGGAAGCATTAGAGCTATCAGGATCAGAAAAAAGAGAAACACTAGAAATCATCATTGGTGGTGGTGGTGGTGGTTCACCTGCTCCTTCCCCTGCTGAATGCCCTCCTCCACCACCACCAAAACCACTCTCCCGATTAGAGAAAGCACGCCGCGTGCTTCTTAAATTCAAAACCCTCATCGATGACCCAAAAGGCTACACTCGAAACTGGAACGAACACACCACCGACACGTGTAAATTCAACGGGATACGATGCGCCACGTACCCAAACTCAAACGAAAAAGCTGTTGCTGGGTTGGATTTCAACACAGCCCGTCTCTCAGGTCGAAACGGCACCGTTTTACCCCTCACCGGGATCTTAGACAGCATACCAGAATTAACATTCTTCCACGTCAACTCTAACAACTTCTCTGGTGCTATCCCAACTCAAATCACGAAATTCCCCTTTTTCTACGAATTGGACCTCAGTAACAACAAACTCGTTGGTGAGTTTCCAAAAGACGTGCTTCAATCCAAACAATTAGTCTTCTTGGACCTAAGGTTTAACAAACTCTACGGTCCAATTCCACCACAACTCTTTCAGATGGATCTAGATGTGATTTTCATAAACGACAACGTTTTCAGTCAATATCTCCCTGAGAATTTCGGATCCACCCCTGCACGGTACCTCACTTTCGCGCGTAACCAACTCACCGGTCCAATTCCAAGGAGTATTGGGAACGCTTCAAAAACCCTAACCGAAGTGCTTTTTCTAGGTAACAAATTTGAAGGGTGCTTGCCTTATCAAATTGGGTACCTTAAGAAGGCTGTTGTATTTGATGTGAGTCAGAATCTTTTAACTGGTCCAATTCCGTACTCATTTGCCTGTTTAGAGAAGATTCAGTTCCTGAATTTGGCGAATAACAAATTCTATGGCCCTGTTCCGGAGAGTGTTTGTTTGCTTCCAGGGATACGCAACAATGGGAACTTGTCTTTGGCGAATAACTATTTCACAGAACTTGGACCTGCGTGCTGGAAGTTGATAAAGTCTAATGTGCTTAATGTGACCAATAATTGTATCCCTGGGCTTCCGAATCAAAAATCACGCAAAGAATGCTATGATTTTCTTTACCATGTGAAGCCTTGCCCGAATCATGAGTTTTTGAGTTACATTCCTTGTAAGAGGCATTGGCAGAAACAGAAACAGAGCCAGAAGCCTGTTCCTCACTCCACGGCTTCACCCCCTGAGCCGGTTACTTACAAGTCTCTAAAACCGCATCGGTTGAGACTCCTCTTCTTCGTAGACTCCCAAATCATTCAAACCCCATCACCATCATCCCCATTGGTACCTGACATTTTAAGCTTCATAGATCAAAGACTTGCTAACATCTTCCCAATTATACAAACCTTTAAAAAATCAATCACCTCAGATCCTTTGGGCGTAACCGCCACATGGGTTGGTCCAAACATTTGTAACTACACAGGCTTCTACTGTGACAACCCACCAGATAATCTAACTGCCATAACCGTCGCCTCCATAGATTTCAACGGTTTTCAGCTCGCATCCCCAACACTAGACGGTTTCATCGATCAACTCCCTGATTTAGCACTTTTCCATGCTAACACCAACCACTTCTCAGGCACAATTTCACCCAAAATCGCAGGACTCAAGTATTTATACGAACTCGATGTAAGTAACAACCTTCTCTCTGGGACATTCCCCATCTCACTCCTCAACATGCCTACTTTGTCCTTTTTGGACATTAGGTACAATTTCTTCACTGGCACTGTGCCTCCACAAATTTTCATGCAAACATTGGATGTGCTTTTCCTCAACAACAACAACTTCATGTTGACACTACCTAACAATTTAGGTGACACGTCAGCAGCTTATCTCACTCTTGCAAATAACAAATTCACCGGTCCCATTCCACGTGGCATTGGAAAGGCCTCTTCCACGTTGATCGAAGTGTTGTTTCTGAACAACCTCTTAACGGGTTGTCTTCCTTACGAAATTGGGTTCCTTAGAAATTTAACGGTTTTTGACGCCGGTGGTAACCGCTTGACGGGGCCGTTACCGTGCTCGTTTGGGTGTTTGAAGAAGGTGGAACAACTTAACCTGGGTAGGAACATGTTGTACGGTCAGGTTCCGGAAGTGGTGTGTGCGTTGGGGAATTTGGCGAATTTGTCTTTGGCTTATAATTACTTTACGAGAGTGGGACCGTTGTGTAAGAAGTTGATTAGAAGTGGGGTTCTTGATGTGAGGAAGAATTGTATCTTTGGTCTTCCGGATCAGAGGACGGTGCAGGAGTGTGTGGCGTTTTTCTTGCTTCCAAGATCTTGCTTGCGACCTGCGTCGTTTAATATCATACCGTGTGAGGTTCCGAGTTTGAGCAAGGATATGGGGAGGAATAAGAGGCATTTGCTGTCATATTCTGCTCTTTCCAGAAATAGAGTAGTTTTGTAA 2529 0.4437 MGTKSLSFSFLAFTFLLAVTSQELAGSEREALELSGSEKRETLEIIIGGGGGGSPAPSPAECPPPPPPKPLSRLEKARRVLLKFKTLIDDPKGYTRNWNEHTTDTCKFNGIRCATYPNSNEKAVAGLDFNTARLSGRNGTVLPLTGILDSIPELTFFHVNSNNFSGAIPTQITKFPFFYELDLSNNKLVGEFPKDVLQSKQLVFLDLRFNKLYGPIPPQLFQMDLDVIFINDNVFSQYLPENFGSTPARYLTFARNQLTGPIPRSIGNASKTLTEVLFLGNKFEGCLPYQIGYLKKAVVFDVSQNLLTGPIPYSFACLEKIQFLNLANNKFYGPVPESVCLLPGIRNNGNLSLANNYFTELGPACWKLIKSNVLNVTNNCIPGLPNQKSRKECYDFLYHVKPCPNHEFLSYIPCKRHWQKQKQSQKPVPHSTASPPEPVTYKSLKPHRLRLLFFVDSQIIQTPSPSSPLVPDILSFIDQRLANIFPIIQTFKKSITSDPLGVTATWVGPNICNYTGFYCDNPPDNLTAITVASIDFNGFQLASPTLDGFIDQLPDLALFHANTNHFSGTISPKIAGLKYLYELDVSNNLLSGTFPISLLNMPTLSFLDIRYNFFTGTVPPQIFMQTLDVLFLNNNNFMLTLPNNLGDTSAAYLTLANNKFTGPIPRGIGKASSTLIEVLFLNNLLTGCLPYEIGFLRNLTVFDAGGNRLTGPLPCSFGCLKKVEQLNLGRNMLYGQVPEVVCALGNLANLSLAYNYFTRVGPLCKKLIRSGVLDVRKNCIFGLPDQRTVQECVAFFLLPRSCLRPASFNIIPCEVPSLSKDMGRNKRHLLSYSALSRNRVVL. 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04416 842 Gene3D Ribonuclease Inhibitor 651 838 IPR032675 -
Seca12g04416 842 Gene3D Ribonuclease Inhibitor 249 400 IPR032675 -
Seca12g04416 842 MobiDBLite consensus disorder prediction 57 71 - -
Seca12g04416 842 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 523 773 - -
Seca12g04416 842 SUPERFAMILY L domain-like 76 381 - -
Seca12g04416 842 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 471 815 - -
Seca12g04416 842 Gene3D Ribonuclease Inhibitor 74 248 IPR032675 -
Seca12g04416 842 MobiDBLite consensus disorder prediction 46 72 - -
Seca12g04416 842 Pfam Leucine rich repeat N-terminal domain 489 520 IPR013210 -
Seca12g04416 842 Pfam Leucine rich repeat N-terminal domain 77 113 IPR013210 -
Seca12g04416 842 Gene3D Ribonuclease Inhibitor 487 647 IPR032675 -
Seca12g04416 842 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 120 393 - -
Seca12g04416 842 SUPERFAMILY L domain-like 493 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04416 Seca-Chr12 119919802 119924791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04416 474 799 Leucine-rich Repeat extension Gene Families AT3G24480 44.479 2.53e-87 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04416 - - gmx:100813314 632.869