Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04412 ATGAGGAAGCCTTGCTGTGATAGCAAAGAAATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATAGATTATATCAAGAAACACGGCGACGTTTGTTGGCGTACACTCCCTCAAGCTGCAGGTTTACTTCGGTGTGGTAAAAGTTGTAGGCTGAGATGGATAAATTATCTACGGCCTGACCTTAAAAGGGGCAACTTTGATGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCACTACTAGGCAACCGGTGGTCATTAATAGCTGGGAGATTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAACTCTCATATAAGAAGAAAGCTTATTAGCAAGGGTATTGATCCAAATAATCATCCTTTAAGCCACAAACTCCTTTCTTCCCTTCAAAATCCACCCATGTGCTTGAAAGACATTAGCAAGAATGAGACAAGTAAAACCCAAGTTGACAATAATTATGGTGAAGTCTCAGATGCTGCAAGTGGCGAGGATGAGTCATATACCATACCGGATTTAAACCTTGATCTCACTATGAGCATTCCTTCTGCTTCACCTTCAACAAGTATTGCTGAAAAAAATCTAAAACCAATTATTCATGAAACCAAATCGTCAAGGAAACTGCATTTTGCTTCCCCTTCAACACTTCTTCTATTTCAATAA 678 0.3982 MRKPCCDSKEMNKGAWSKQEDQKLIDYIKKHGDVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFDEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHPLSHKLLSSLQNPPMCLKDISKNETSKTQVDNNYGEVSDAASGEDESYTIPDLNLDLTMSIPSASPSTSIAEKNLKPIIHETKSSRKLHFASPSTLLLFQ. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04412 225 Gene3D - 67 131 - -
Seca12g04412 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Seca12g04412 225 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca12g04412 225 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca12g04412 225 SMART sant 12 62 IPR001005 -
Seca12g04412 225 SMART sant 65 113 IPR001005 -
Seca12g04412 225 CDD SANT 68 111 IPR001005 -
Seca12g04412 225 FunFam MYB transcription factor 67 127 - -
Seca12g04412 225 CDD SANT 15 60 IPR001005 -
Seca12g04412 225 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Seca12g04412 225 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Seca12g04412 225 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Seca12g04412 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Seca12g04412 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 163 - -
Seca12g04412 225 MobiDBLite consensus disorder prediction 148 170 - -
Seca12g04412 225 FunFam MYB-related transcription factor 12 65 - -
Seca12g04412 225 Gene3D - 5 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04412 Seca-Chr12 119859699 119862025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04412 2 187 MYB Transcription Factor Family AT4G38620 55.122 1.64e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g04412 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04412 K09422 - gmx:100814923 342.043