Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04410 ATGATTTCAAAAATGCCATCTTATGAATTATCCCAGCCCCTGGCTCAAGAAATTAGTCAGGTTCTTGGCAAACCTGCAAATGGATTGCAGAAACAAAACAGCTGTCCTGAAAATTTATCTGAACTAGACAGCATTCCTGTAAACAATGGAAGGAAAAGTTGCAGCACGACTGGGGCTGGATCTCGCTTGGAAAGAACAAGGAGCATTCCCACGGTTTCCTTATCGAATGTAACTGATCCTGAAAATCAAGAAACTTCTGAGAGAAAGAGTCTATCTGAGGTTAAAAAGACTGAAACAATTGTAATTCCTGAAGATTTCCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATGTAACTTGTCCAAAAACTCAGCAGAAGCTCCAGCATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTACTCAGTGGTGTATAGACCACAACATTGAGCAGCCAACCGGACTAACTAATGGCAAAATCAAAAAGAGTGATGGATCGTTCAGAGATGTCACAGGTGACATAGCAGCAATCGAAACTCTGGTCCGGAAGCTCTCCAGCCGGTCCATTGAGGAGCGTAGAACTGCTGTTGCTGAAATTCGATCACTATCAAAACGAAGCACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTTTAACATCAGAAGATGTATTGACACAAGACAATGCAGTTACTGCAATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCTATTCCCTCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCGGATGAGAACAAAATAATAATTGGTGCCTCAGGAGCTATACCTGCATTAGTAGAACTACTCCAAAATGGGAGCCCCAGAGGAAAGAAGGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGGAACAAAGGCAGGGCCATCAGGGCAGGGATCATCACAGCATTGTTGAACATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCTCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCTATTGTAAAAGCCAGCACTATTCCAGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCATTGTGCAAGAGGGATGCTGACAATCTTGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTTTCTGACCTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTATTGGAGCATCTTCGTAAGTTACAGCAGCTCTGA 1446 0.4253 MISKMPSYELSQPLAQEISQVLGKPANGLQKQNSCPENLSELDSIPVNNGRKSCSTTGAGSRLERTRSIPTVSLSNVTDPENQETSERKSLSEVKKTETIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLQHLTLTPNYVLRSLITQWCIDHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIETLVRKLSSRSIEERRTAVAEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTAILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLNMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSDLARTGTERAKRKATSLLEHLRKLQQL. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04410 481 SUPERFAMILY RING/U-box 99 176 - -
Seca12g04410 481 Pfam Armadillo/beta-catenin-like repeat 314 352 IPR000225 GO:0005515
Seca12g04410 481 Pfam Armadillo/beta-catenin-like repeat 232 270 IPR000225 GO:0005515
Seca12g04410 481 CDD RING-Ubox_PUB 103 155 IPR045210 -
Seca12g04410 481 SMART Ubox_2 105 168 IPR003613 GO:0004842|GO:0016567
Seca12g04410 481 FunFam RING-type E3 ubiquitin transferase 381 480 - -
Seca12g04410 481 Gene3D - 383 480 IPR011989 -
Seca12g04410 481 SUPERFAMILY ARM repeat 201 475 IPR016024 -
Seca12g04410 481 Coils Coil 461 481 - -
Seca12g04410 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 175 IPR013083 -
Seca12g04410 481 SMART arm_5 231 271 IPR000225 GO:0005515
Seca12g04410 481 SMART arm_5 395 435 IPR000225 GO:0005515
Seca12g04410 481 SMART arm_5 354 394 IPR000225 GO:0005515
Seca12g04410 481 SMART arm_5 313 353 IPR000225 GO:0005515
Seca12g04410 481 SMART arm_5 272 312 IPR000225 GO:0005515
Seca12g04410 481 FunFam RING-type E3 ubiquitin transferase 180 380 - -
Seca12g04410 481 Pfam U-box domain 102 172 IPR003613 GO:0004842|GO:0016567
Seca12g04410 481 Gene3D - 184 276 IPR011989 -
Seca12g04410 481 Gene3D - 277 382 IPR011989 -
Seca12g04410 481 ProSiteProfiles U-box domain profile. 101 175 IPR003613 GO:0004842|GO:0016567
Seca12g04410 481 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Seca12g04410 481 PANTHER U BOX DOMAIN-CONTAINING 80 477 - -
Seca12g04410 481 MobiDBLite consensus disorder prediction 25 91 - -
Seca12g04410 481 MobiDBLite consensus disorder prediction 25 81 - -
Seca12g04410 481 FunFam RING-type E3 ubiquitin transferase 101 176 - -
Seca12g04410 481 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Seca12g04410 481 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04410 Seca-Chr12 119821632 119825219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04410 74 480 U-box Gene Family AT1G23030 72.304 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04410 - - gmx:100815448 833.558