Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04403 ATGGATGCTTATAGAGGTGAAGGGTCGTCGTCATCTTCATCTTACTACACCATTCTTGGTGTTAGTTCTGATTCTTCCATAGAAGAGATTCGCCGTGCTTACAGGAAGCTTGCTATGCAGCAATGGCATCCTGATAGGTGGACAAAAACACCCTCTTTACTGGGTGAAGCCAAGCTCAAATTCCAGCAAATTCAAGAAGCCTATTCAGTGCTATCTGACCCCAAGAAAAGAACCATGTATGATGCAGGCTTGTATGATCCTCAAGAGGAAGAGGATGAGGGCTTTTCTGATTTTGTGGGAGAAATGGTGTCCCTTATGGATCAAGTGAAGAGAGAGGTATGGTTCTTGAGTCTTGACCACCTTCTATAA 369 0.439 MDAYRGEGSSSSSSYYTILGVSSDSSIEEIRRAYRKLAMQQWHPDRWTKTPSLLGEAKLKFQQIQEAYSVLSDPKKRTMYDAGLYDPQEEEDEGFSDFVGEMVSLMDQVKREVWFLSLDHLL. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04403 122 ProSiteProfiles dnaJ domain profile. 14 84 IPR001623 -
Seca12g04403 122 Pfam DnaJ domain 15 81 IPR001623 -
Seca12g04403 122 ProSitePatterns Nt-dnaJ domain signature. 61 80 IPR018253 -
Seca12g04403 122 SUPERFAMILY Chaperone J-domain 11 87 IPR036869 -
Seca12g04403 122 CDD DnaJ 15 73 IPR001623 -
Seca12g04403 122 SMART dnaj_3 13 76 IPR001623 -
Seca12g04403 122 PANTHER PUTATIVE, EXPRESSED-RELATED 7 111 - -
Seca12g04403 122 Gene3D DnaJ domain 3 109 IPR036869 -
Seca12g04403 122 PRINTS DnaJ domain signature 16 34 IPR001623 -
Seca12g04403 122 PRINTS DnaJ domain signature 35 50 IPR001623 -
Seca12g04403 122 PRINTS DnaJ domain signature 56 76 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04403 Seca-Chr12 119711670 119712843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04403 10 82 C2H2 Transcription Factor Family AT1G74250 47.297 3.68e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04403 - - lja:Lj0g3v0084989.1 182.185