Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04386 ATGTCCACAGACGAGATCACAAAAATAGAAGAAGGTGGAATTAAGGCACAAAGGGATTCTGGGTGTTGCGGTTCTCCTGGGGTCGTTAGCGTCATACAAAAGGTAATAGCAGAGGTGATAGGGACATACTTCTTAATATTTGCAGGGTGTTCCTCTGTTGTTCTGAATAAAATAGAACAGAGTAAAGGGACAATAACATTTCCAGGAATTTGTGTGGTATGGGGTCTAATAGTGATGGTTTTGGTTTATGCTCTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCAGTAACCGTTAGCTTTGCCATTTATCGTCATTTCCCTCTGAAACAGGTGCCATTGTATATTATTGCACAGGTCCTAGGATCTCTCCTTGCTAGTGGGACATTGTATCTTCTCTATGATGATCTAAATGAAACAACTTATTTTGGAACTGTACCAACAGGATCTGATGTTCAATCCCTTGTCGTTGAGATCCTCACATCATTTCTCTTGATGTTTGTTGTCTCTGCGGTTTCTACAGACAATAGAGCAGTTAGTATATTGAGTCTACTTTTTTTTTTACAGATTGGAGAATTGGCAGGGATTGCTGTTGGGATGACAATCGTAATAGACGTCTTCATTGCTGGGCCTGTATCAGGGGCATCAATGAACCCAGCTAGAAGCCTTGGACCTGCAGTGGTGATGCATATCTACAATGGATTTTGGGTTTATATGGTTGGACCATTTGTTGGTGCAGTACTAGGTGCCTCAGCCTACAACCTTATTAGATTTACTGACAAACCACTTAGAGAACTCAGCGCAAGTTCAAGCTTCTTCAAAAGATCAAGTTTTCGGTAG 840 0.4143 MSTDEITKIEEGGIKAQRDSGCCGSPGVVSVIQKVIAEVIGTYFLIFAGCSSVVLNKIEQSKGTITFPGICVVWGLIVMVLVYALGHISGAHFNPAVTVSFAIYRHFPLKQVPLYIIAQVLGSLLASGTLYLLYDDLNETTYFGTVPTGSDVQSLVVEILTSFLLMFVVSAVSTDNRAVSILSLLFFLQIGELAGIAVGMTIVIDVFIAGPVSGASMNPARSLGPAVVMHIYNGFWVYMVGPFVGAVLGASAYNLIRFTDKPLRELSASSSFFKRSSFR. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04386 279 NCBIfam MIP family channel protein 37 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 PANTHER AQUAPORIN NIP2-1 20 271 IPR034294 -
Seca12g04386 279 Pfam Major intrinsic protein 29 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Seca12g04386 279 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Seca12g04386 279 CDD MIP 33 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g04386 279 Gene3D Glycerol uptake facilitator protein. 11 266 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04386 Seca-Chr12 119340605 119342879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04386 4 274 Major Intrinsic Protein MIP AT5G37820 59.854 7.36e-113 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04386 K09874 - gmx:100819179 376.326