Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04378 ATGCTGTTGAGTTCATTTGATGTGACATGGCCACGGTGGTTGTGGGACTCCAGTTCACATCTGAGTCCAACCTTTCTGGTCACCCTGATTGGTGTGCTATGGTTACTATGGAGGTTCAAGAATTCAAGCAATGGAACCACCCTTCCATCTCCATTGCCTCCAGGTCCTTTTGGCTTGCCATTTGTTGGTTACCTTCCCTTTCTAGGAACCCAACCCCACATCAAATTTGATAAGCTTGTACGAGTTTATGGTCCTATCTTCAAGGTCATGTTGGGAACCAAAACATACATAGTGGTTAGCTCACCTTCACTGGTGAAAGAGATAGTGCGTGACCAAGACACCATATTTGCCAACCGTGACCCTCCCATTGCTGCAATGATTGGCTTGTATGGTGGCACTGATATAGCCTCTTTGCCTCATGGTCCAAAATGGAAGAAGGCTCGCAAGATATTTGTGCGTGAGTTGCTCAGCAATACAAACCTCAGTTACTCTTTTTCTCATAGAAGGGTGGAGGTTAAGAAATCCATCAAACATGTGTATGAGGAGAAAATAGGGTGCCCTGTAAATGTTGGTGAGTTGGCTTTTCTGACAGCTACAAATTCAATAATGAGTATGATTTGGGGTGAGACTTTACAAGGTGAACAAGGGGCTTCTATTGGGGTTGAGTTTAGAGCATTGGTGTCAGAACTCATGGTGTTAATTGGGAACCCAAATATTTCAGATCTTTACTCCTCTATAGCCTGGTTAGATTTGCAAGGAATTGAAAGTAGAACAAGAAAAGTCTCACAGTGGATTGATAGGCTTTTTGATTCTGCCATTGAAAAGCGAATGAATTTGACAGGGAATGGAGAAACTAAGTCAGAGAAGAAAGATTTCCTGCAATATCTGTTGGAGGTGGAGCTTAAAAGAAGTGATAGTCATTCAGCATCAATGACTATGAACGAGATCAAAGCTCTCCTCATAGATGTAGTGGTGGGTGGAACCGAGACCACATCAACGACATTGGAATGGGTGGTGGCAAGGTTGTTTCAGCATCCAGAGGCTATGAAGAGAGTCCATGAAGAGTTGGATGCGGTAATAGGATTGGATAACTGTGTTGAATTAGAATCCCAGTTGTCCAAATTACATTACTTAGAAGCTGTCATAAAGGAAACACTTCGTTTGCACCCTCCTCTTCCCTTTCTGATACCCCGTTGCCCAAGTCAAACTAGAATGGTTGGTGGATATACCATACCCAAAGGTGCACAAGTACTCTTGAATGTGTGGACCATACAAAGGGACCCTGAAATTTGGGAAGATGCATTGGAATTTCGACCAGAGAGGTTTCTAAGTGGTGATGCTGGCAAGTTGGATTACTGGGGCAACAAATTTGAGTATCTTCCTTTTGGATCTGGAAGAAGAATTTGTGCTGGACTACCTCTTGCAGAGAAGATGGTAATGTTTATGCTAGCTTCCTTCTTGCATTCCTTTGAGTGGAGATTGCCTAGTGGCACAGTGCTTGAATTTTCAGGCAAATTTGGCGCTGTTGTCAAGAAAATGAAGCCACTGGTTGCTATTCCAAAGCCTAGGCTATCAAAACCAGAATTCTATCAATAA 1596 0.4305 MLLSSFDVTWPRWLWDSSSHLSPTFLVTLIGVLWLLWRFKNSSNGTTLPSPLPPGPFGLPFVGYLPFLGTQPHIKFDKLVRVYGPIFKVMLGTKTYIVVSSPSLVKEIVRDQDTIFANRDPPIAAMIGLYGGTDIASLPHGPKWKKARKIFVRELLSNTNLSYSFSHRRVEVKKSIKHVYEEKIGCPVNVGELAFLTATNSIMSMIWGETLQGEQGASIGVEFRALVSELMVLIGNPNISDLYSSIAWLDLQGIESRTRKVSQWIDRLFDSAIEKRMNLTGNGETKSEKKDFLQYLLEVELKRSDSHSASMTMNEIKALLIDVVVGGTETTSTTLEWVVARLFQHPEAMKRVHEELDAVIGLDNCVELESQLSKLHYLEAVIKETLRLHPPLPFLIPRCPSQTRMVGGYTIPKGAQVLLNVWTIQRDPEIWEDALEFRPERFLSGDAGKLDYWGNKFEYLPFGSGRRICAGLPLAEKMVMFMLASFLHSFEWRLPSGTVLEFSGKFGAVVKKMKPLVAIPKPRLSKPEFYQ. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04378 531 CDD CYP76-like 81 520 - -
Seca12g04378 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Seca12g04378 531 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 Gene3D Cytochrome P450 40 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 104 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 80 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 FunFam Predicted protein 324 518 - -
Seca12g04378 531 PANTHER OS08G0547900 PROTEIN 23 531 - -
Seca12g04378 531 Pfam Cytochrome P450 53 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g04378 531 SUPERFAMILY Cytochrome P450 53 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04378 Seca-Chr12 118829368 118837203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04378 17 530 Cytochrome P450 AT4G12320 45.648 2.65e-167 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04378 - - gmx:100785686 843.573