Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04367 ATGAACCTCGTTTTCTTCTACTTTTGCTTCATTCAAAGCTCTCTCTCAGTCACAGCTTCTTCACCATCTGCTTTAAGATCAACCTATACATTCCCCAAAGAAGCCCTCCCCACCAAATCAGGTTACCTCCCAGTGAGCCCCACATCCTCTTCCTCCATTTTCTACACTTTCTATGAAGCACAAAATTCCATTTCACCTCTCTCCCAAACCCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATCGGCAACTTGTTCGAGCTTGGACCCTGGCGTGTCACAAATTCCCTTACCCTTCAACCAAACCCTGGTGCTTGGAATCGAATCTTTGGCCTTCTTTTTCTTGATAACCCCATTGGAACTGGATTCAGTATAGCCTCAACACGAGAAGAAGTCCCAACCGATCAAAACACAGTTGCCAAACACCTTTTTGCTGCTATAACAAGTTTTCTTCAACTTGACCCTGTTTTCAAGCATCGCCCAATTTATATTACTGGGGAAAGCTATGCTGGCAAGTATGTTCCTGCAATTGGGTATTACATATTGGAGAAAAATGCTGAGTTAAAGGTCTCTGAGAGAGTGAATTTGGCTGGTGTGGCAATTGGGGATGGGTTAACAGACCCTGTAACTCAAGTGGTTACTCATGCTGCCAATGCTTACTATGTTGGATTGATCAATGAGAGGCAAAAGAATGAGTTGGAGAAAGCTCAATTAGAAGCTGTTAGATTGATCCAAACAGGGAATTGGAGTGAAGCAACGGATGCGAGAAGAAAAGTCTTGGGAGTGTTGCGCAACATGACAGGGTTGGCTACTTTGTTTGACTATACAAGGAAAGCTCCTTATGAAGAGAATTTGGTTTCTCAGTTCTTGAACTCTGTTGAGGTGAAGAAAGCCTTGGGTGTGAATGAATCGTTTGTGTATGAGAGATGCAGTGATATTGTTAACGCTGCATTACATGATGATGTGATGAAAAGTGTGAAATATATGGTGGAACACTTGGTGAGGAGGAGCAGGGTGTTGTTATATCAAGGTCAGTATGATTTGAGCGATGGTGTAGTCCAAGTAGAAGCTTGGGTGAAGACAATGAAATGGGAAGGAATTGTGGAGTTTCTGAGTGCTGAGAGGAAGATTTGGAAGGTAAATGGAGAGCTTGCTGGGTATGTACAAAATTGGAAGTCTCTTACTAATGTTGTGGTTTTGGAGGCTGGGCATCTTTTGCCTCATGATCAGCCTGTGAATTCTCAAGCAATGATAGAAGACTGGGTTTTGGAAAGGGGTTTATTTAAAACTTGA 1305 0.433 MNLVFFYFCFIQSSLSVTASSPSALRSTYTFPKEALPTKSGYLPVSPTSSSSIFYTFYEAQNSISPLSQTPLLIWLQGGPGCSSMIGNLFELGPWRVTNSLTLQPNPGAWNRIFGLLFLDNPIGTGFSIASTREEVPTDQNTVAKHLFAAITSFLQLDPVFKHRPIYITGESYAGKYVPAIGYYILEKNAELKVSERVNLAGVAIGDGLTDPVTQVVTHAANAYYVGLINERQKNELEKAQLEAVRLIQTGNWSEATDARRKVLGVLRNMTGLATLFDYTRKAPYEENLVSQFLNSVEVKKALGVNESFVYERCSDIVNAALHDDVMKSVKYMVEHLVRRSRVLLYQGQYDLSDGVVQVEAWVKTMKWEGIVEFLSAERKIWKVNGELAGYVQNWKSLTNVVVLEAGHLLPHDQPVNSQAMIEDWVLERGLFKT. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04367 434 Pfam Serine carboxypeptidase 36 426 IPR001563 GO:0004185|GO:0006508
Seca12g04367 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 118 IPR001563 GO:0004185|GO:0006508
Seca12g04367 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 129 IPR001563 GO:0004185|GO:0006508
Seca12g04367 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 179 IPR001563 GO:0004185|GO:0006508
Seca12g04367 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 398 411 IPR001563 GO:0004185|GO:0006508
Seca12g04367 434 FunFam Carboxypeptidase 22 433 - -
Seca12g04367 434 SUPERFAMILY alpha/beta-Hydrolases 37 426 IPR029058 -
Seca12g04367 434 Coils Coil 230 250 - -
Seca12g04367 434 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 415 IPR001563 GO:0004185|GO:0006508
Seca12g04367 434 ProSitePatterns Serine carboxypeptidases, serine active site. 168 175 IPR018202 GO:0004185
Seca12g04367 434 Gene3D alpha/beta hydrolase 17 431 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04367 Seca-Chr12 118709435 118710739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04367 289 426 Calmodulin-binding Proteins AT2G22960 21.429 6.68e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04367 K09645 - gmx:102663282 724.161