Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04361 ATGGGTATCAGTGGACCTTGGCTTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTTCCCCGTCTTAGTACACCACCCCTTGTGTCTAATACAACTGTGGCTGGTAATCTAGAAACAGCAATTGTTGCACCAAAGCCAATTCGTGTTACTCCTAACCTTGTTACTGGGCTTGAGGATTTATCTCAACCATGGACTCGATCCCCAACAAAATCTAAAATGGAACCTGTTGTGGCTACATGGCATTTCATATCTCCAGATTCCTCTCAACCTGATAACTCAGCCCTAGACTTCTCTCATGAAGCAACCACAGATCCTTCATCTTTCAGGGACACCATTAGGCTTGCTCCAATGCCTGATTCATGTGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCGATACAAGCTTTGTTGGAGAATAAAGGTGTTCCAGTTATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAGTCGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCTCACTTGATTTATCTTTACTATCAAAGAATATTGATGACATAAGAAAAGGTCGAAGAACGAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAGCTTCAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTTCCCAAAATGAGATCATGATGACTGTGTTTCCTATGTTCCAGCAACTTATCGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGATTTTGACCCCGTGCTTTCTCCTGAGAGTTCATTGTTTGTATTAAAGAGTAATAAAAAGGTAGCTTATCAAGATATTCTAGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCCTCTAATGGGCAGTTGACAGATAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATCAGAGAAGGAAACTTCATAATTCAGCCTAAAGTCGACTTTGATATCAGCATTAGCACAGTTTCTGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATATATCAGGATGGCAAGATTCTAATTGAGGTTGATCATCTACAAGATATCTCTAGCCCATACATTCAAATAAAGGGTGTTAATAAAGATGCTGTAGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTACCTTGAAATAGTTTTGGAAAGACTGCCAGCAATAGAGAGAACTTCTGGCGGGATTCACTCTCAGCAGTCAGCACGGCTGCTAGAGATTGTTGAATTTATTCAATCTCAGGGATGTAGCTCTGCTTCAGAATCCTCACCAAGTAGGGTAGTCTCTCCAATTGAAGGCATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTTGCTATAAATACGGTTCTGTGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATGA 1749 0.3991 MGISGPWLTKSYLEMILERKGVPRLSTPPLVSNTTVAGNLETAIVAPKPIRVTPNLVTGLEDLSQPWTRSPTKSKMEPVVATWHFISPDSSQPDNSALDFSHEATTDPSSFRDTIRLAPMPDSCDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSSLDLSLLSKNIDDIRKGRRTKVPIFDLESGARSGFKELQVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVSGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDISSPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPAIERTSGGIHSQQSARLLEIVEFIQSQGCSSASESSPSRVVSPIEGIIEEMQSRIRRLERWLAINTVLWTFLMSALVGYSLYQRRRQ. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04361 582 PRINTS Uridine kinase signature 147 164 - -
Seca12g04361 582 PRINTS Uridine kinase signature 268 278 - -
Seca12g04361 582 PRINTS Uridine kinase signature 174 185 - -
Seca12g04361 582 PANTHER URIDINE KINASE 126 520 - -
Seca12g04361 582 Pfam Phosphoribulokinase / Uridine kinase family 149 314 IPR006083 GO:0005524|GO:0016301
Seca12g04361 582 SUPERFAMILY CYTH-like phosphatases 355 489 IPR033469 -
Seca12g04361 582 CDD UMPK_like 149 317 - -
Seca12g04361 582 SMART AAA_5 146 290 IPR003593 GO:0016887
Seca12g04361 582 Gene3D - 333 494 - -
Seca12g04361 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 317 IPR027417 -
Seca12g04361 582 Gene3D - 146 323 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04361 Seca-Chr12 118591659 118613095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04361 142 305 PRT Gene Family AT1G55810 26.404 2.34e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04361 - - gmx:100778905 1021.15