Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04357 ATGGAAATCACTAGCAGCCATAATAGCAGTAGCATGATGTGGTTTTTCAAGGATAGAGGGTTTGATGATAACAGCATACAAGGAATGTTCAGAAAATGCAAGCGCCTTGAGATTGTGCATCAGGAAAGAGCAAATGAGAACTGGGAGTATTTGAGAAGCATTGGCATTCAAGAAAGGAAATTGCCCTCAATTGTTTCAAAATGCCCTAAGATTCTTGCACTGGGTCTTAATGAGAAGATTGTGCCCATGGTTGAGTGTCTCAGGACACTAGGAACAAAACCCCATGAAGTTGCTTCTGCCATAGCCAAGTTCCCTCATATACTCTCACATAGTGTGGAGGAGAAGCTCTGTCCCCTTTTGGCCTTCTTTCAGGCATTAGGCGTCCCCGAAAAGCAAATTGGGAAAATCATACTGTTAAACCCTAGGCTTATCAGTTACAGCATTGAAACAAAGATGGCAGAAATTGTAGACTTCCTTGCCACCCTTGGTCTGAAAAAAGATGGAATGATTGGAAAAGTTATAGTCAAGGATCCATTTATTATGGGTTATAGTGTTGATAAGAGGCTCCGCCCTACTTCACAGTTTCTGAAGTCAATAGGTCTGACTGAGGAGGATCTTCAAGTGGTGGCAATGAACTTCCCATCAATTTTGAGTAGAGATGTGAACAAGGTTTTGGAACCAAATTATGCTTATTTAAAGAAATGTGGATTTCAAGACAGACAGGTAGTTGATTTGGTGGTTGGTTTTCCTCCTATCCTGATCAAGAGTATCCAAAATTCTTTAGAACCGAGGATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGATGAAGTCATTGATTATCCTTGCTTCTTTCGTCATGGCCTGAAGAAAAGATTAGAGTTGCGGCACAAACTTCTAAAGCAGAGGAATTTAAATTGTAGCTTGAGTGAAATGCTGGACTGTAATAAGAAGAAGTTCCTCATGAAGTTTGGCTTGTTAGAAGGATGCGCCTTGAGTAACTAG 1008 0.4058 MEITSSHNSSSMMWFFKDRGFDDNSIQGMFRKCKRLEIVHQERANENWEYLRSIGIQERKLPSIVSKCPKILALGLNEKIVPMVECLRTLGTKPHEVASAIAKFPHILSHSVEEKLCPLLAFFQALGVPEKQIGKIILLNPRLISYSIETKMAEIVDFLATLGLKKDGMIGKVIVKDPFIMGYSVDKRLRPTSQFLKSIGLTEEDLQVVAMNFPSILSRDVNKVLEPNYAYLKKCGFQDRQVVDLVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKKRLELRHKLLKQRNLNCSLSEMLDCNKKKFLMKFGLLEGCALSN. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04357 335 Pfam mTERF 13 123 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 Pfam mTERF 106 322 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 Gene3D Transcription termination factor 3, mitochondrial 111 328 IPR038538 -
Seca12g04357 335 Gene3D Transcription termination factor 3, mitochondrial 1 110 IPR038538 -
Seca12g04357 335 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 97 329 - -
Seca12g04357 335 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 SMART mt_12 243 275 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Seca12g04357 335 PANTHER CGI-12 PROTEIN-RELATED 132 252 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04357 Seca-Chr12 118492214 118493221 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca12g04357 mTERF 5.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04357 K15032 - gmx:100816929 583.178