Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04356 ATGGAGCCTAATAATGCTTGCAGCATGCATTCACATTGCATAGAAATGTCTATGGAAGTACACCAAGTTGTTCCACCACCTCACAAGAGCACCTTACAGAAGCTCAAGGGAAGGTTCAAGGAAACTTTTTTCCCTGATGATCCTCTGCGCCAATTCAAGGGACAACCACTTAAGAGAAAACTAATCCTTGCTGCTCAATATTTGTTCCCTATTCTTCAATGGGGTCCTAGTTACAGCTTCAAACTCTTTAAATCTGACCTTGTTTCTGGCCTCACTATTGCTAGTTTGGCCATCCCACAGGGAATCAGTTATGCTAAGCTTGCAAATCTTCCTCCAATTGTGGGACTCTATTCTAGTTTTGTTCCCCCACTTGTTTATGCTGTTCTTGGAAGTTCAAGGGACCTAGCAGTAGGACCTGTTTCTATTGCTTCTCTTGTGTTGGGTTCCATGTTGAGGCAGGAAGTGTCTCCCACAGCAGACCCAGTTCTGTTTCTTCAATTAGCTTTTACTTCAACATTCTTTGCTGGTCTATTTCAAGCTTCTCTTGGAATCCTGAGGCTAGGATTTATAATTGATTTTCTATCTAAGGCCATCCTTATTGGGTTCATGGCTGGTGCTGCTATAATTGTCTCTCTTCAACAGCTTAAGAGCCTCCTTGGAATCAAACATTTCACTACAAAGATGGGCTTGATTCCTGTTATGATGGTCCTGGCAAACAATATTGATGGGAATTTGCTTCTTAGTGCTATTACTACTGGCAAGACACGTTGTAAGTATTCTCTTCAACCATGTCTTACTTCTTTCTCTGCTTTTTTTTTTTTCTTTCAAAGCATAAGGAAACCAAAGCTATTCTGGGTCTCAGCTGGAGCTCCTCTTGTGTCTGTCATAATCTCCACTCTTGTGGTTTTTGCAATGAAGGGTCAAAATCATGGCATCAGTGTAATTGGAAAATTGCAAGAAGGAATAAATCCTCCTTCATGGAATATGTTACGCTTACATGGCAGTCACCTTGGTCTAGTCATGAAAGCTGGCCTTATCACTGGCATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGGACATTTGCAGCTCTTAGAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGGTTTATGAATGTTGTTGGCTCCTTCACTTCCTGCTATGTTACAACAGGTGCTTTCTCTAGGTCAGCTGTTAATAATAATGCAGGTGCAAAAACAGCAGCCTCAAATATAGTTATGTCTGTGACAGTCATGGTGACACTGCTGTTTCTTATGCCATTGTTCCAATACACGCCTAATGTTGTATTGGGGGCTATCATAGTTACAGCAGTGATTGGTCTCATTGATATCCCTGCTGCTTGTCACATTTGGAAGATAGACAAATTCGATTTCCTTGTGATGTTGACTGCTTTCTTGGGTGTTATTTTTATCTCAGTACAGGAAGGCCTTGCTCTTGCAGTTGGGATATCAACTTTTAGGATACTCCTGCAAATTACAAGGCCAAAAACAGTAATGTTGGGGAAGATACCAGGGACAGACATATATAGAAATCTTCATCAATATAAGGAAGCTGTAAGAATACCAGGTTTTCTTATTTTAAGCATTGAGGCTCCTATCAATTTCGCTAACATCACATATCTCAATGAGAGGACAATACGATGGATTGAAGATGAAGAAGAAGGAGATAACATAAAGGAAGACTCAAGCCTTCGATTTTTAATCCTTGATATGTCAGCTGTGAGTGCCATTGACACAAGTGGAATCTCACTTTTCAAGGAGTTGAAAACAACAGTGGAAAAGAAGGGTCTTGTCTTGGTGAATCCTCTGGCTGAGGTTATAGAAAAGCTGAAAAAAGCAGATGAAGTGAATGATTTCATACGACCAGAAAACCTTTTCTTGACAGTTGGAGAGGCTGTAGCTTCACTTTCATCAACAATGAAGGGCCATTCAACCACGACAGAAGAAGCACACACAATTGTGCCACATTATTGA 2007 0.4066 MEPNNACSMHSHCIEMSMEVHQVVPPPHKSTLQKLKGRFKETFFPDDPLRQFKGQPLKRKLILAAQYLFPILQWGPSYSFKLFKSDLVSGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLVLGSMLRQEVSPTADPVLFLQLAFTSTFFAGLFQASLGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGIKHFTTKMGLIPVMMVLANNIDGNLLLSAITTGKTRCKYSLQPCLTSFSAFFFFFQSIRKPKLFWVSAGAPLVSVIISTLVVFAMKGQNHGISVIGKLQEGINPPSWNMLRLHGSHLGLVMKAGLITGILSLTEGIAVGRTFAALRNYKVDGNKEMMAIGFMNVVGSFTSCYVTTGAFSRSAVNNNAGAKTAASNIVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDIPAACHIWKIDKFDFLVMLTAFLGVIFISVQEGLALAVGISTFRILLQITRPKTVMLGKIPGTDIYRNLHQYKEAVRIPGFLILSIEAPINFANITYLNERTIRWIEDEEEGDNIKEDSSLRFLILDMSAVSAIDTSGISLFKELKTTVEKKGLVLVNPLAEVIEKLKKADEVNDFIRPENLFLTVGEAVASLSSTMKGHSTTTEEAHTIVPHY. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04356 668 PANTHER SULFATE TRANSPORTER 30 649 IPR001902 GO:0016020|GO:0055085
Seca12g04356 668 Gene3D STAS domain 505 650 IPR036513 -
Seca12g04356 668 FunFam Sulfate transporter 31 505 650 - -
Seca12g04356 668 ProSiteProfiles STAS domain profile. 525 647 IPR002645 -
Seca12g04356 668 NCBIfam sulfate permease 70 642 IPR001902 GO:0016020|GO:0055085
Seca12g04356 668 ProSitePatterns SLC26A transporters signature. 112 133 IPR018045 GO:0008271|GO:0008272
Seca12g04356 668 CDD STAS_SulP_like_sulfate_transporter 526 640 - -
Seca12g04356 668 Pfam Sulfate permease family 83 474 IPR011547 GO:0016020
Seca12g04356 668 Pfam STAS domain 526 643 IPR002645 -
Seca12g04356 668 SUPERFAMILY SpoIIaa-like 531 647 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04356 Seca-Chr12 118481525 118489393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04356 2 654 Inorganic Solute Cotransporters AT3G15990 61.120 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04356 K17471 - tcc:18609783 981.474