Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04348 ATGTCTGATAATTCTTCATTTAGTAGCTTTCTCTCTGCAGCCACTCCAAGTTCGCCACATAATTCCCATGCACCTCCAAAAAGCACCACAATAGCCCAACCTTGTTGTATTTGCACCCATTGCAACCATCTCCTCACCTTCAATCACCATGCTGGTAATGTAGCAGAGCAAGGAACAAGCAAAACTGGGTCCCATATGCAACCCCAACAAAGCTCAAGGTGGAGTCCAACACCAGTTCAGTTATTAGTCCTTGAGGAATTGTATAGGCAGGGCACAAAGACACCATCAGCAGAACAAATCCAGCAAATAGCTGCACAGCTACGCCAGTTTGGGAAGATTGAAGGGAAGAATGTGTTCTATTGGTTTCAAAATCACAAGGCAAGAGAGCGGCAAAAGCGTCGTCGCAGAGAGATGGAGGAAACTGCTTCTTCTACTCAAGGTGTTTGGATTTTGGCTACAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGATATATCAGAAAAGGGATCTAGTGGGTGGGCTCAATTTGAGGAGAGAGGAATACAAGTTTTGAGGAGAAGCATATCACAAGCAGAAAGGCAAGCTAAGTGCCAAAATATAGAAATGCCTTGCTTCCAAGCTCCAATTACTATGCCAATGCCACAAAGACAACAACTTTTAACCCCTCAAAATTATGATTTACAATCTGTATTCAACAGAGGAATTAGTTTCAACTATTATGATGAAGAAAATGCAGATGCAAAGACCCTTGACCTTTTTCCAGTTAAGAGGGATGACCAACAAGATGGAATTTGTGTAGCTCCTGAGAGGAAATCTATGTTATGTGGCAATGCTTCTATGGACACTGAAATCACCTCCAATCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTAA 957 0.4253 MSDNSSFSSFLSAATPSSPHNSHAPPKSTTIAQPCCICTHCNHLLTFNHHAGNVAEQGTSKTGSHMQPQQSSRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIAAQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEETASSTQGVWILATGLKETGCGVKETKKWASTSNCSGHAEESAALDISEKGSSGWAQFEERGIQVLRRSISQAERQAKCQNIEMPCFQAPITMPMPQRQQLLTPQNYDLQSVFNRGISFNYYDEENADAKTLDLFPVKRDDQQDGICVAPERKSMLCGNASMDTEITSNQFFEFLPLRN. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04348 318 Coils Coil 195 222 - -
Seca12g04348 318 CDD homeodomain 73 127 IPR001356 GO:0003677
Seca12g04348 318 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g04348 318 MobiDBLite consensus disorder prediction 55 75 - -
Seca12g04348 318 Gene3D - 63 138 - -
Seca12g04348 318 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Seca12g04348 318 SMART HOX_1 69 136 IPR001356 GO:0003677
Seca12g04348 318 Pfam Homeodomain 71 131 IPR001356 GO:0003677
Seca12g04348 318 SUPERFAMILY Homeodomain-like 64 134 IPR009057 -
Seca12g04348 318 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 52 312 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04348 Seca-Chr12 118299076 118301061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04348 71 193 Wox Gene Family AT3G18010 52.174 2.78e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca12g04348 Homeodomain 2.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04348 - - gmx:102666678 417.927