Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04347 ATGACACTCGACTTCCACACCAACAAGAAGGTTCTAGAAGAGGTCGCTATTATACCTTCCAAAAGGCTCCGAAACAAGATCGCTGGCTTCTCCACACATCTCATGAAGCGAATTCACAAAGGTCCCGTTCGTGGCATCTCCCTCAAGTTTCAGGAAGAAGAGCGTGAACGCCGCATGGACTTCGTTCCCGAAGTTTCCGCCATTAACACCGAAAATATTCAGGTCGATAAGGAAACACTCGACATGCTCCATGCCCTTGGACTCAATGATATTCCTGGCATCACACAGGTTGACCCTGTCCCTCTCCTAGTTTTTCCTTCTAGGAGGTATTACGAAAGGGGAAATTCTACTCTACCCTACGCTGAGAGAGAGTTTTGGTACTTTTTTTTTGATAATTTAATCAATTTCTCTCAACTTTTTTAA 423 0.4444 MTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIHKGPVRGISLKFQEEERERRMDFVPEVSAINTENIQVDKETLDMLHALGLNDIPGITQVDPVPLLVFPSRRYYERGNSTLPYAEREFWYFFFDNLINFSQLF. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04347 140 PANTHER 40S RIBOSOMAL PROTEIN S17 1 98 IPR001210 GO:0003735|GO:0005840|GO:0006412
Seca12g04347 140 SUPERFAMILY Rps17e-like 2 38 IPR036401 GO:0003735|GO:0005840|GO:0006412
Seca12g04347 140 Gene3D - 1 39 IPR036401 GO:0003735|GO:0005840|GO:0006412
Seca12g04347 140 ProSitePatterns Ribosomal protein S17e signature. 18 33 IPR018273 GO:0003735|GO:0005840|GO:0006412
Seca12g04347 140 Pfam Ribosomal S17 1 97 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04347 Seca-Chr12 118256662 118257084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04347 1 113 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 72.650 1.27e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04347 K02962 - gmx:100527036 191.815