Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04341 ATGGAGAACATTCTTGGTCTTATCAGACTTCGTATCAAAAGAGGCACTAATCTCATAGCTCGTGATACTCGTACAAGTGACCCATATGTTGTTGTCACCATGGCCGAACAGAAACTGAAAACTGGTGTTGTGAAAGATAACTGTAATCCTGAGTGGAATGAAGAATTGACACTTTATCTTGGAGATGTTAATGCTCCAATACATCTGACAGTTTCTGACAAAGACACTTTCACTGTGGATGACAAAATGGGCGAAGCAGAGATAGACATAAAACCATATCTCCAGTGTGTGAAGATGGGCTTGAACGATCTCCCAGATGGCCATGTAATCAAGAAGGTTGAACCAAATAGGACTAATTGCCTTGCTGAAGAGAGTAGCTGCATATGGAGAAATGGAAAAGTCATCCAAGAGATGAATTTAAGATTGAGAAATGTTAAGTCTGGGGAAGTAACGGTGGAAATTGAGTGGATTGATCTTCCAGATTCCAAGGGCTTTGGCACTGCAAAGTATGATGAAGTTGTGGTGGATGAAGAATTGGACAAGATTAGGAGGCTTCAGAATGGTTCAGATGTTAGAGGAGTGGCATTGGAAGGTGAGAAAGGCAGAGCAGTTGACCTTACTCCACCTGCTGTAGAGGCAATATCAGAGAGTTTTGGGGAATGGGTTATCAATGGTTTAGAGAAGGAAAGAGGAAATCCTGTGGAGAATGTGAGTGTGTCTCTTGGACGTGACCCTAGAATTTCAGGGTCTAAATTGAGTGTAGCAGTCTTTGCAGGCCTTGCTCGTGCTGGTTGCATGGTGTTTGATATGGGATTAGCTACCACACCAGCTTGTTTCATGAGCACATTGTTGCCTCCATTTTTCTATGATGCTTCAATAATGGTAAGTTACCAGCCAGTTTGGATAAACCAGATGACAGCATCTCACTTGCCTTATACTCGTAATGGTCTGAAATTTTTCACAAAGAGAGGGGGATTGACTTCACTAGAGGTAGAGGAAATATGTGACAAAGCTGCTCGTAAATATGCAAATAGATTCGCCAAAGTGTCTACCATGCTTAATGTTCTTCCAACAAGAGTTGATTTCATGAGCACTTATGCAAAGCACCTACGAGAAATCATCAAGGAGAGAATCAATCATCCTTTGCATTATGACACTCCACTCCAGGGATTTCAGATAATAGTGAATGCTGGAAATGGCTCAGGAGGATTCTTCACATGGGATGTCTTAGACAAGCTTGGTGCAGACACTTTTGGTTCTCTGTATCTTAACCCTGATGGGATGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACTGCCATGGCATTGACCAGAGCAGCAGTGTTAGATAATACAGCTGATCTTGGAATAGTTTTTGATACTGATGTGGACAGAAGTGGTGTGGTTGATAACAAAGGGAATCCAATCAATGGTGACAAGCTGATTGCTCTTATGTCTGCCATTGTATTAAGAGAACATCCAGGATCAACTATAGTCACTGATGCACGTACAAGTATGGGACTCACTAGATTCATAACTGATAAAGGGGGTCATCATTGCCTATATCGTGTTGGTTACAGAAATGTCATTGACAAGGGTGTTCAGCTTAACAAGGATGGAATTGAAACACATCTTATGATGGAAACTTCTGGTCATGGTGCTCTCAAGGAAAATCATTTCCTTGATGATGGGGCCTATATGGTGGTGAAAATTATAATTGAAATGGTACGAATGAAGCTTGCGGGATCAGATGAAGGGATTGGTAATCTAATAAAAGATCTTGAAGAACCGTGTGAATCAGTAGAATTAAGGATAAATATCATCTCTGAACCTCGACATGCTAAAGCAAAAGGGTCAGAGGCTATTGAAACATTTAGAAACTACATTGAGGAAGGGAAGCTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTGAGTGAAGGGTGCCTTATAGATACAAATGACACCCCAACTCCCATTGATGCTCACATGTACAGGGCAAAAGTATCAAATGATGAGCATGGAGAACATGGTTGGGTACACATGAGGCAGAGTATTCACAACCCAAATATTGCTGTGAACTTGCAATCATCTATTCATGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAGTTTCTCAAATCAAGTGGAGTTGATACATTCCTTGACATTACTCAAATTGATAAGTTTGTTGAAAATGGCCCCCTAGCCTGA 2229 0.4141 MENILGLIRLRIKRGTNLIARDTRTSDPYVVVTMAEQKLKTGVVKDNCNPEWNEELTLYLGDVNAPIHLTVSDKDTFTVDDKMGEAEIDIKPYLQCVKMGLNDLPDGHVIKKVEPNRTNCLAEESSCIWRNGKVIQEMNLRLRNVKSGEVTVEIEWIDLPDSKGFGTAKYDEVVVDEELDKIRRLQNGSDVRGVALEGEKGRAVDLTPPAVEAISESFGEWVINGLEKERGNPVENVSVSLGRDPRISGSKLSVAVFAGLARAGCMVFDMGLATTPACFMSTLLPPFFYDASIMVSYQPVWINQMTASHLPYTRNGLKFFTKRGGLTSLEVEEICDKAARKYANRFAKVSTMLNVLPTRVDFMSTYAKHLREIIKERINHPLHYDTPLQGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLYLNPDGMFPNHIPNPEDKTAMALTRAAVLDNTADLGIVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLREHPGSTIVTDARTSMGLTRFITDKGGHHCLYRVGYRNVIDKGVQLNKDGIETHLMMETSGHGALKENHFLDDGAYMVVKIIIEMVRMKLAGSDEGIGNLIKDLEEPCESVELRINIISEPRHAKAKGSEAIETFRNYIEEGKLKGWELDSCGDCWVSEGCLIDTNDTPTPIDAHMYRAKVSNDEHGEHGWVHMRQSIHNPNIAVNLQSSIHGGCLSMARAFRDEFLKSSGVDTFLDITQIDKFVENGPLA. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04341 742 PANTHER PHOSPHOHEXOSE MUTASE 178 735 - -
Seca12g04341 742 PRINTS Phosphoglucomutase/phosphomannomutase family signature 301 315 IPR005841 GO:0005975|GO:0016868
Seca12g04341 742 PRINTS Phosphoglucomutase/phosphomannomutase family signature 425 438 IPR005841 GO:0005975|GO:0016868
Seca12g04341 742 PRINTS Phosphoglucomutase/phosphomannomutase family signature 390 409 IPR005841 GO:0005975|GO:0016868
Seca12g04341 742 PRINTS Phosphoglucomutase/phosphomannomutase family signature 454 469 IPR005841 GO:0005975|GO:0016868
Seca12g04341 742 SUPERFAMILY Phosphoglucomutase, first 3 domains 365 476 IPR016055 GO:0005975|GO:0016868
Seca12g04341 742 Gene3D C2 domain 4 163 IPR035892 -
Seca12g04341 742 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 366 474 IPR005845 GO:0005975
Seca12g04341 742 FunFam phosphomannomutase/phosphoglucomutase isoform X1 392 469 - -
Seca12g04341 742 SMART C2_3c 7 102 IPR000008 -
Seca12g04341 742 FunFam Phosphomannomutase/phosphoglucomutase isoform B 471 592 - -
Seca12g04341 742 SUPERFAMILY Phosphoglucomutase, first 3 domains 478 579 IPR016055 GO:0005975|GO:0016868
Seca12g04341 742 Gene3D - 392 470 - -
Seca12g04341 742 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 184 343 IPR005844 GO:0005975|GO:0016868
Seca12g04341 742 Gene3D - 471 593 - -
Seca12g04341 742 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Seca12g04341 742 Pfam C2 domain 7 92 IPR000008 -
Seca12g04341 742 CDD C2_ArfGAP 5 148 - -
Seca12g04341 742 Gene3D - 186 351 - -
Seca12g04341 742 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 478 578 IPR005846 GO:0005975|GO:0016868
Seca12g04341 742 SUPERFAMILY Phosphoglucomutase, first 3 domains 189 374 IPR016055 GO:0005975|GO:0016868
Seca12g04341 742 CDD PMM_PGM 185 717 - -
Seca12g04341 742 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 157 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04341 Seca-Chr12 118150593 118159095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04341 38 166 C2H2 Transcription Factor Family AT1G70790 59.542 1.59e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04341 - - gmx:100810397 1054.28