Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04318 ATGGATTCACTGAGTGGAGATATATTTCATAGTTTTATAAGGACAGAATCTAATATCAACGCTGATGGTAATGAACCCCAAAAATCTAATTCCCCCAATAATGATAATGTTGAAACTGATAAGATTGTTGATGGTTACAAAAAGATATCTGAATTAACATATGAGGATATCAGAGGTCTTGAGTTTGATTCTGAAGAGGATGCATATGTTTTCTACCATGAGTATGCAAAATTTATAGGGTTTGTTGTTAGGAAACATGATGTGTATAGAGATCGTAATGATGTAATTACAATGAGACAATTTGTATGTAACAAGGAGGGAGAGAGAAGTGGGAAGCATCTTAATAGGAATGATAGAAAGAGGGAGGCAAAGGCCATTACACGAACAAAATGTAATGCAAGGCTCCGAATTCATTTAAATTATAAGAGTAGGAAGTGGAGGGTTGGTTTTTTTGAGCCAATTCACAACCATGAATTGACTCCTACGAGTATGGTACATTTGCTACCAGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAAGTTGATGGTCTTCATTTATATGGTGTTAGGACTTGCCATATTATGGGTCTTATAATGGGTCAGAAGGGGGGTTATTCAGATCTTGGATTCTGTAAGAAAGATTTGTACAATCACATTGATAAGGTCAATAGGGCAAAAATTGAGGATGGTGATGCTTTTGCAGCCTTGTGTTACCTTCAGGCAAAGTATGATAACAATCCAATGACATTTGTGAAGTTTACAACCACTGAAGATGATAGACTTGAGAACTTGTTTTGGGCTTATGTAGGTAGTAGAATTGATTATATTTGTTTTGGGGATGTAGTTGCTTTTGACACCACATATAAGAAAAATAAGTATAACAGACCTTTAGTAATTTTTTGTGGTTATAATCATCATGGTGAAACCACCATTTTTGGTTGTGCTCTTTTTGTTGATGAGAAGGCTGAAACATATAAATGGGTCCTTGAAACATTTCTCGAAGCTATGTGTGATAAAGTTCCTAAGGTTGTGGTTACAGATGGAGATGGTGCAATGTGTGAAGCTATGAGGGTTGTTTTTCCTGGTGCTCTTCAAAGGCTTTGTGCATGGCACCTCCATCAAAATGCTTGTGAAAATGTTAAGAATCCAAAATTTCTTGAATATTTCAAGAACCTAATTTATGGAAATTTTACCCGTGAGAAATTTGAGGATGGGTGGAACAAAGTTGTTGAGAAACATGGTGTGAGGGAAAATAGGTGGGTTAGAAAAGTGTATGAGCTGAAGAGGATGTGGGCCACTGCATATTTAAGGGATAGCTTTTTTGGGGGGATTAGGACAACTTCTATCTGTGAAGGAATAAACTCTTTCATTAAAAGGTATGTTCAAAGAAAAAATAGCCTTATGGATTTTCTTCACAATTTTGAGAGAGCTGTCAATGAATACAGACACAATGAGTTAACTTCAGATTTCAAGTCTACATACACTCAACCTGTGATGACAACTGCATTGGAAAAGTATGAAGTTCAAGCTTCTAATGTGTACACGAGGAATAAGTTTTTTGATGTTCAAAAGGAAATTGAGAAAGTTGCTGCCATTAATGTCATTGATAGGTCAGATGTTGGAAATGTAGTTACAATGAGGTTGAATAAATTTGGAAGTCCTGATAGTGTAAATAATGTCCATCTTCATAAGGACAATGGTAATTTGGTTTGTGATTGTCGTTTATTTGAATCCTGTGGCATCCCCTGTTCACACATATTCAGTGCTATGAAGCATGAGCAAGTGGAATCCATTCCTGCATCTCTTATTTGCAAGAGATGGACCAAGTTTGCTAAAGTTGACCACATTTCTGCTGTTTATGCTGAAGAAGGTGACACATCTAAGAAGGATTTATTGAGGTCAGGTGTTGTTGGTGCTGCATGTAACATGCTTAACAAGACTGCTCGTAGAAATCCTCATAATTTTGTCAAAAACATTGAATGTATTCATAAGTTAGTTGAACAGATGGAACGATAG 2019 0.364 MDSLSGDIFHSFIRTESNINADGNEPQKSNSPNNDNVETDKIVDGYKKISELTYEDIRGLEFDSEEDAYVFYHEYAKFIGFVVRKHDVYRDRNDVITMRQFVCNKEGERSGKHLNRNDRKREAKAITRTKCNARLRIHLNYKSRKWRVGFFEPIHNHELTPTSMVHLLPAYRGLSVADKAQVDGLHLYGVRTCHIMGLIMGQKGGYSDLGFCKKDLYNHIDKVNRAKIEDGDAFAALCYLQAKYDNNPMTFVKFTTTEDDRLENLFWAYVGSRIDYICFGDVVAFDTTYKKNKYNRPLVIFCGYNHHGETTIFGCALFVDEKAETYKWVLETFLEAMCDKVPKVVVTDGDGAMCEAMRVVFPGALQRLCAWHLHQNACENVKNPKFLEYFKNLIYGNFTREKFEDGWNKVVEKHGVRENRWVRKVYELKRMWATAYLRDSFFGGIRTTSICEGINSFIKRYVQRKNSLMDFLHNFERAVNEYRHNELTSDFKSTYTQPVMTTALEKYEVQASNVYTRNKFFDVQKEIEKVAAINVIDRSDVGNVVTMRLNKFGSPDSVNNVHLHKDNGNLVCDCRLFESCGIPCSHIFSAMKHEQVESIPASLICKRWTKFAKVDHISAVYAEEGDTSKKDLLRSGVVGAACNMLNKTARRNPHNFVKNIECIHKLVEQMER. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04318 672 MobiDBLite consensus disorder prediction 19 39 - -
Seca12g04318 672 MobiDBLite consensus disorder prediction 19 38 - -
Seca12g04318 672 Pfam MULE transposase domain 282 376 IPR018289 -
Seca12g04318 672 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 642 IPR031052 GO:0006355
Seca12g04318 672 SMART 26again6 570 597 IPR006564 GO:0008270
Seca12g04318 672 Pfam FAR1 DNA-binding domain 71 160 IPR004330 -
Seca12g04318 672 ProSiteProfiles Zinc finger SWIM-type profile. 559 595 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04318 Seca-Chr12 117750745 117752763 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04318 MULE 2.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04318 - - tpra:123910662 718.768