Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04311 ATGGTCCTTAATTCTGGTGTTGTTTCTGCAGAAAATGTTCAATTCAAAAAATTTCATATGCCCTCATGGGCTTGCGTGAATCCTACTCTTCACCACACCAACCATCACCAAACTACCCTGTGGTCAACTTCAGGACACACCCATGAGCCCTCTCAGAGTATTACTACATGGTTCCAACCCAACATGAATGGTCATTGGGTTTCTACGATTCTTGAACCGATTCACAAATCAGGCACATTCTTGTTTCCTCATGGAGCTAGGCTCAGGGAACCTTGGACTCAGAGAGAGCATGAGTTATTTCTGATGGGACTAATTAAGTATGGAAAAGGACATTGGACCAAAATTTCTAGACACCTTTTGTGGAACAAGACACCACAACAAGTTCAAAGCTATGCTGCTAGCTTCTTCAAGATCCTACAAGCCACATACTTATATGCATCTAAGAGAAGGAAACCCGTCAACTACTCTGCTGGTAGCCTTATGGATAGAAATAGGAATCTCATGGATGCATCTACATCATATTCAATACAAATGGTTCTTAATGAACCACAACGAACCCTCACTCTCTTCCCAAAGAAAACTCCTTTCTCTCAGGTTCCACCATTCGAAGAAGGTAGCAGGAGCGACAACCATATCGATGGGTTCCAAATGCTAACAAATAGTGCAACCACTTCCATGACTGCTAGTGCTAATGGAGAAATTGATTTAGAGCTTCGCTTAGGATGA 726 0.4229 MVLNSGVVSAENVQFKKFHMPSWACVNPTLHHTNHHQTTLWSTSGHTHEPSQSITTWFQPNMNGHWVSTILEPIHKSGTFLFPHGARLREPWTQREHELFLMGLIKYGKGHWTKISRHLLWNKTPQQVQSYAASFFKILQATYLYASKRRKPVNYSAGSLMDRNRNLMDASTSYSIQMVLNEPQRTLTLFPKKTPFSQVPPFEEGSRSDNHIDGFQMLTNSATTSMTASANGEIDLELRLG. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04311 241 SUPERFAMILY Homeodomain-like 91 137 IPR009057 -
Seca12g04311 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 140 IPR017930 -
Seca12g04311 241 ProSiteProfiles SANT domain profile. 87 140 IPR017884 -
Seca12g04311 241 SMART sant 88 138 IPR001005 -
Seca12g04311 241 CDD SANT 91 132 IPR001005 -
Seca12g04311 241 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 63 175 IPR043363 -
Seca12g04311 241 Gene3D - 90 141 - -
Seca12g04311 241 Pfam Myb-like DNA-binding domain 89 131 IPR001005 -
Seca12g04311 241 ProSiteProfiles Myb-like domain profile. 89 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04311 Seca-Chr12 117639808 117641107 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g04311 Myb_DNA-binding 7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04311 - - gmx:102663307 239.58