Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04289 ATGGCGAGATTGAAGGTGCTGTCAGCCCTTGACTCAGCCAAAACACAATACTACCATTTCAAGGCCATCATCATTGCAGGGATGGGGCTATTCACTGACGCATACGACCTCTTCTCCATCACTCTCATCATCAAGATGCTTGGAAGGATATATTACAGCGACCACACAGACCGCATCCACCAAGTCAAACCCGTTGTAGCATCCACCCTGGTGGCGGTCGCACTCTTAGGGACGGCCATCGGTCAAATAGTATTCGGCAGGCTCGGTGACCTCAAAGGGCGGCGGCGCGTGTATGGATTCGCTCTGTTGTTGATGGTCCTGGGTTCCTTGGCTTCTGGATTCTCCATATGTACAACCAGATCTTGTGTGCTGACATCTTTGGGCTTCTTCAGATTCTTGTTGGGGTTGGGGATTGGAGGAGATTACCCTCTATCTTCTACCATCATGTCTGAGTTTGCTAACAAAAGGACACGAGGGTCTTTCATAGCGGCGGTGTTTTCTATGCAAGGATTCGGCATATTGGCCAGCGCCACCGTCACGATGGTGGTGTGCTCCATATTCCGCCGTGCGTCTAAGCCGTCATCGCCTCATGATGCGCCGGCAGAGGCTGACGTTGCATGGAGGTTGATACTGATGATAGGTTCAGTTCCGGCAGCCATGACTTATTACTGGCGTATGATGATGCCCGAAACTGCCAGGTACACAGCATTGGTGGAACAAAATGTGTTGCAAGCAGCAAAGGACATGGAAAAAGTACTAGACGTCTCAATAAGCCAGATTGCTGAAGAAAATCCACTACCACCAGCCCCACATGCATACCCACTTTTTTCTTGGGAGTTCTTGCGTCGTCATGGTCGTGATCTTTTCGCTTGTTCCTCTACTTGGTTCCTCTTGGACATTGTGTTCTATAGCCAGGTTCTATTCCAGAGTGAAATATACAAACGTTATCTCAAGGACAAAGAAAAAGTGGATATTTATGAAGAGGCTTTTCATCTAGCCAGAGTCCAAGCCATTATTGCTGTGTGTTCCACAATTCCTGGCTACTATTTCTCCGTGTATTTCATTGATCGTGTGGGAAGAGTCAAAATCCAAATGATGGGTTTTTTCTTCATGGCATTGGCATTTTTTGCCATTGGAATTCCCTATTACTCATATTGGACCACTGAAAATAATGATGATAATAAAGGCTTTATGGTCCTTTATGGGCTTGCTTTCTTCTTTGCCAATTTTGGACCCAATACCACAACTTTTATAGTCCCTGCTGAACTCTTCCCTGCCAGGTTTAGATCAACATGTCATGGCATTTCTGGGGCTGTTGGAAAGGTTGGGGCTATTATTGGATCTGTTGGGTTTCTTTGGGCTTCACATAAAAAGAAAGAGGAAGGATATCCTAATGCAATTGGAATGAAAATATCCTTGATCATACTTGGAGGGGTGTGCATAGTGGGAATGTTGGTCACATACTTTTTCACCAAAGAAACCATGGGAAGGTCTTTGGAAGAAAATGAGATTGATGAGCCTCATCAAGCTGAAGATTATAGCGATATTTAA 1551 0.4558 MARLKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFSITLIIKMLGRIYYSDHTDRIHQVKPVVASTLVAVALLGTAIGQIVFGRLGDLKGRRRVYGFALLLMVLGSLASGFSICTTRSCVLTSLGFFRFLLGLGIGGDYPLSSTIMSEFANKRTRGSFIAAVFSMQGFGILASATVTMVVCSIFRRASKPSSPHDAPAEADVAWRLILMIGSVPAAMTYYWRMMMPETARYTALVEQNVLQAAKDMEKVLDVSISQIAEENPLPPAPHAYPLFSWEFLRRHGRDLFACSSTWFLLDIVFYSQVLFQSEIYKRYLKDKEKVDIYEEAFHLARVQAIIAVCSTIPGYYFSVYFIDRVGRVKIQMMGFFFMALAFFAIGIPYYSYWTTENNDDNKGFMVLYGLAFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAVGKVGAIIGSVGFLWASHKKKEEGYPNAIGMKISLIILGGVCIVGMLVTYFFTKETMGRSLEENEIDEPHQAEDYSDI. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04289 516 Gene3D MFS general substrate transporter like domains 18 515 IPR036259 -
Seca12g04289 516 Pfam Sugar (and other) transporter 24 502 IPR005828 GO:0016020|GO:0022857|GO:0055085
Seca12g04289 516 SUPERFAMILY MFS general substrate transporter 10 503 IPR036259 -
Seca12g04289 516 FunFam Inorganic phosphate transporter 1-6 18 516 - -
Seca12g04289 516 ProSiteProfiles Major facilitator superfamily (MFS) profile. 22 495 IPR020846 GO:0022857
Seca12g04289 516 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 20 501 - -
Seca12g04289 516 CDD MFS_PhT 23 494 - -
Seca12g04289 516 ProSitePatterns Sugar transport proteins signature 2. 133 158 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04289 Seca-Chr12 117221701 117226603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04289 1 506 Inorganic Solute Cotransporters AT1G76430 63.846 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04289 K08176 - gmx:100797683 831.632