Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04280 ATGGAAGGTGAGCAGATTGTGGACGTGGGATCTGTGGTAGAAGCTGTTTCAGCTGATGATGGTGACGCTCCACTTTACACCCTTGAAAGCCTCTGCATGCGTTGTGGCCAAAACGGGATTACAAGATTTTTATTGACGTTAATTCCTCATTTCAGAAAGATTTTGTTGTCAGCTTTTGAATGTCCTCATTGTGGCGAGAGGAACAATGAAGTACAATTTGCTGGTGAAATTCAACCGCGTGGTTGTTGTTACTCTTTGGAGATCCGAGCAGGAGATCAAAAGATGCTCAATCGACAAGTGGTAAAATCAGAATCTGCTACCATTAAGATACCCGAACTGGATTTTGAGATTCCACCGGAGGCTCAACGTGGTAGTCTGTCAACGGTGGAAGGGATACTAATGCGAGCTGCTGATGGACTTCAGGCCCTTCAAGAGGAACGCAAAAAAGTGGCTCCTGAGACAGCTGCAGCTATTGATCAGTTCTTGATGAAATTGCGAGCCTGTGCATCAGGAGAATCGTCCTTCAAGTTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCGTTTGCACCATCATCTGATCCATCACTGACTATCAAGTTTTATGAGAGAACTCCTGAGCAACAAGCATCATTGGGATATCTCGTTGATTCTACACAAATCGAAGGATCTCGTGATGAAGCACCAGAAGGGGGAGAAGCTGTGGCTGCTGATCAAATGAGAAGAGAACCACATGGGTCAGTTGGGGCAGTAGCTGGTCATCGAGCCATTGCACAGAGTAATAGTGCAGAAATTGCAGAAGCCTTGTTTCGATATACTGCACCAGAAGAGGTGATGACTTTCCCATCTACTTGTGGTGCTTGTGCCGCTAGGTGCGAAACTCGAATGTTTGTCACCAGTATCCTTTTGCCATTTTTCATACTGCCATTGGGATACTCTTTGCCTGTGTTTGTTATGTTTATTTAG 975 0.4492 MEGEQIVDVGSVVEAVSADDGDAPLYTLESLCMRCGQNGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIRAGDQKMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADGLQALQEERKKVAPETAAAIDQFLMKLRACASGESSFKFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTQIEGSRDEAPEGGEAVAADQMRREPHGSVGAVAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAARCETRMFVTSILLPFFILPLGYSLPVFVMFI. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04280 324 SMART zpr1 30 190 IPR004457 GO:0008270
Seca12g04280 324 PANTHER ZINC FINGER PROTEIN ZPR1 11 304 IPR040141 -
Seca12g04280 324 Gene3D ZPR1, zinc finger domain 276 310 IPR042452 -
Seca12g04280 324 Gene3D ZPR1, zinc finger domain 22 75 IPR042452 -
Seca12g04280 324 FunFam Zinc finger protein ZPR1 20 75 - -
Seca12g04280 324 Pfam ZPR1 zinc-finger domain 30 189 IPR004457 GO:0008270
Seca12g04280 324 FunFam zinc finger protein ZPR1 76 217 - -
Seca12g04280 324 Gene3D ZPR1, A/B domain 76 217 IPR042451 -
Seca12g04280 324 NCBIfam ZPR1 zinc finger domain 32 214 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04280 Seca-Chr12 116985823 116992060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04280 2 309 C2H2 Transcription Factor Family AT5G22480 73.786 2.62e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04280 K06874 - gmx:100798741 542.347