Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04279 ATGGCATCAACATGTGATGCTTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGACGAATTCCTGAAAAAGGAAAAAGGATTACTCTTTTTGTGAAAAATGTTAATGACCTGAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGTTGGCAAGCGGTACCCTCGGAGGAATTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGATAGTCTTGATGAACATAGAAGAAGCAAGTGGCTAGACTTTAAAGCAAGGCTAAACAAGCTTCTTAGCTTGGAAGAAGCATGGACCCTCATTCTTGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTAAAAGACGACAATCAATTAACATTCGAGGAATATGAGAGGTCATGGGAGCAAAATGAAGAATTAGGTCTGAATGATATGGACACCTCTACTGCCGATGCTGCTTATGAATCAACAAATGCTACCAGAGTTGAGTGA 552 0.4022 MASTCDACGYRNSELKPGGRIPEKGKRITLFVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEHRRSKWLDFKARLNKLLSLEEAWTLILDDALANSFVAPATDDLKDDNQLTFEEYERSWEQNEELGLNDMDTSTADAAYESTNATRVE. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04279 183 SMART zpr1 1 134 IPR004457 GO:0008270
Seca12g04279 183 FunFam Zinc finger protein ZPR1 20 162 - -
Seca12g04279 183 NCBIfam ZPR1 zinc finger domain 3 166 IPR004457 GO:0008270
Seca12g04279 183 MobiDBLite consensus disorder prediction 159 183 - -
Seca12g04279 183 Pfam ZPR1 zinc-finger domain 1 132 IPR004457 GO:0008270
Seca12g04279 183 Gene3D ZPR1, A/B domain 20 162 IPR042451 -
Seca12g04279 183 PANTHER ZINC FINGER PROTEIN ZPR1 1 177 IPR040141 -
Seca12g04279 183 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04279 Seca-Chr12 116978473 116984782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04279 1 182 C2H2 Transcription Factor Family AT5G22480 77.473 3.05e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04279 K06874 - gmx:100798741 342.043