Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04271 ATGAAATTCTCGTGGCAATCAATCTTTCCTAATTGTTATAAGGGTGAGTACTCCTCACCCATGCCCACCGAAGTGGTAGCTACAAAGGCTAGTACTTTTAACAAGATCTCTGTCACGGATTTGAGTTTTCCAAGTGCTACCACTCCTTCAGAGGATCTCTCTGTTTCTCTAGCAGGATCTAACTTGCATGTTTTCACACTCGTTGAGCTCAAGATTATCACACAGGCCTTCTCTTCAAGTAACTTTCTTGGAGAAGGAGGGTTTGGACCTGTGCATAAGGGGTTCATTGATGACAAGCTTAGACCTGGTCTTGAGGCTCAGACAGTGGATGTCAAACTCTTGGATTTGGATGGCACTCAGGGTCATAAAGAGTGGCTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCAACCACACCTTATGAAGCTGATTGGATATTGCTATGAAGAAGAACATAGGCTTCTGGTATATGAATACTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGTAAGATCTATTGA 528 0.428 MKFSWQSIFPNCYKGEYSSPMPTEVVATKASTFNKISVTDLSFPSATTPSEDLSVSLAGSNLHVFTLVELKIITQAFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQTVDVKLLDLDGTQGHKEWLTEVVFLGQLRQPHLMKLIGYCYEEEHRLLVYEYLPRGSLENQLFRSKIY. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04271 175 ProSiteProfiles Protein kinase domain profile. 77 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04271 175 Pfam Protein tyrosine and serine/threonine kinase 81 171 IPR001245 GO:0004672|GO:0006468
Seca12g04271 175 PANTHER OS01G0588500 PROTEIN-RELATED 53 171 - -
Seca12g04271 175 FunFam Serine/threonine-protein kinase BIK1 44 159 - -
Seca12g04271 175 SUPERFAMILY Protein kinase-like (PK-like) 49 173 IPR011009 -
Seca12g04271 175 Gene3D Phosphorylase Kinase; domain 1 35 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04271 Seca-Chr12 116678030 116678678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04271 60 170 Receptor kinase-like Gene Family AT3G58690 40.541 3.12e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g04271 PK_Tyr_Ser-Thr 7.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04271 - - gmx:100783759 283.108