Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04264 ATGGAGGATCAGGCAGTTTTAGGTGGTGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGATGGGGAGGAAATTCATGAGGAAGAATTGAAGGATGACCTTGATGAATTTTCAGTGAAGTTGTTCTTCAAGGGCTTGTCAATAGCCGGAATTGAAAATTCCGGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGAGCATGTGGTCTTCCTATTATTCGGGTGCAGAAAAGGCTTGATTTTTATGCAGAGGAGCCACTAATTGATTATTTGGCACTCATGGATGGTTTGCTGGAAGCAGCGCAGAACAAGATCCGTCGAGTTTTTGCTTTCACAGATTCTGAGTTGTTGTACCAACAGATAACATTTGATAAAAATCTTGAGATGCCACTTTTGATTGCTTTGAGAGAAAGGATTCTGGAACATGCCAATAGTTTTGAAGCTTTCACCCTGAATCTTGTTTCAAGTATTGATCTTGAGCAGCCACAGCAATTAGCCAAAGTAGCAATTGGACTTGTCACTTTTCCTGTAAATGGGAAGAGTTTACTTGAGAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCATTTATGATCACCATGAAATGTTTACACAAGTTTTGTTCACATTGCTTGAGGGCCTATGTTGATAGAAAAGTACAATCTTGTCAAGTTCCTGTAAGATGTCCTGAACCAGGATGCAAATATTACATCTCTGCCACTGAGTGCAGGTCTTTCCTACCATTCACCTCCTTTGAATCTTTGGAGAAAGCCCTTCATGAAGCAAATTTCCTTCGCTCAGATAGAATTTACTGTCCATTTCCAAATTGTTCTGTTCTCCTTGATCCCCATAAATGTTTATCAGCCAGGGCTAGTTCATCAAGTCAGTCAGACAGTTCTTGTGTTGAGTGTCCTGTTTGTGAGAGGTTTATCTGTGTGGACTGTAAGGTTCCGTGGCATTCTTCCATGAGCTGTGAAGAATTTCAGAATCTTCCTGAGGAGGAGAGAGATGCTTCTGATATTACTTTGCATCGCCTTGCTCAGAATAAAAGGTGGAAGCGTTGCCAGCAATGTCGTCGGATGATAGAACTTACTCATGGTTGTTACCACATGACATGCTGGTGCGGTCACGAGTTTTGTTATTCTTGTGGTGCTGAATACAGGGATGGTCAACAGACATGTCAGTGTGCATTTTGGGATGATGACAACTCTGAAGACTCAGTGTCACACTCTCTCCAAGAATCAGAGCAATGGGCATGGGAGACTTTCAATTCTATCTCCATGGCCATGGATGCATACTCCGACCAGGAAAGATCACAGCTTGCACTTATACAAAGGTTTCTAGCTGGGGGTTTAGGTCTGAGTGACCATCATCCTTACCAATCTCCTCCCCCCTGTACAGACTCCTATGTGGATGCAATGAAGGATCTACATCAGCTTCCATGGCTCGAGAGGTTTGTGTCTGTGATAAGTGATGACTATGAAGATTATGTTCAATGA 1515 0.4251 MEDQAVLGGVGREEEEDEFCSCCEDGEEIHEEELKDDLDEFSVKLFFKGLSIAGIENSGSGFSGIGVFMERACGLPIIRVQKRLDFYAEEPLIDYLALMDGLLEAAQNKIRRVFAFTDSELLYQQITFDKNLEMPLLIALRERILEHANSFEAFTLNLVSSIDLEQPQQLAKVAIGLVTFPVNGKSLLESCSICCEDKPLPFMITMKCLHKFCSHCLRAYVDRKVQSCQVPVRCPEPGCKYYISATECRSFLPFTSFESLEKALHEANFLRSDRIYCPFPNCSVLLDPHKCLSARASSSSQSDSSCVECPVCERFICVDCKVPWHSSMSCEEFQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDDDNSEDSVSHSLQESEQWAWETFNSISMAMDAYSDQERSQLALIQRFLAGGLGLSDHHPYQSPPPCTDSYVDAMKDLHQLPWLERFVSVISDDYEDYVQ. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04264 504 Gene3D - 327 453 - -
Seca12g04264 504 SUPERFAMILY RING/U-box 343 407 - -
Seca12g04264 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 270 IPR013083 -
Seca12g04264 504 SMART ibrneu5 340 399 IPR002867 GO:0008270
Seca12g04264 504 SMART ibrneu5 258 330 IPR002867 GO:0008270
Seca12g04264 504 ProSiteProfiles TRIAD supradomain profile. 187 405 IPR044066 -
Seca12g04264 504 Pfam Reverse transcriptase-like 58 160 IPR002156 GO:0003676|GO:0004523
Seca12g04264 504 Pfam IBR domain, a half RING-finger domain 350 399 IPR002867 GO:0008270
Seca12g04264 504 Pfam IBR domain, a half RING-finger domain 271 330 IPR002867 GO:0008270
Seca12g04264 504 Gene3D - 43 177 IPR036397 GO:0003676
Seca12g04264 504 CDD BRcat_RBR_unk 272 333 - -
Seca12g04264 504 SUPERFAMILY RING/U-box 189 267 - -
Seca12g04264 504 FunFam RBR-type E3 ubiquitin transferase 43 178 - -
Seca12g04264 504 FunFam RBR-type E3 ubiquitin transferase 328 453 - -
Seca12g04264 504 FunFam RBR-type E3 ubiquitin transferase 186 271 - -
Seca12g04264 504 ProSitePatterns Zinc finger RING-type signature. 208 217 IPR017907 -
Seca12g04264 504 ProSiteProfiles Zinc finger RING-type profile. 191 235 IPR001841 -
Seca12g04264 504 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 140 419 IPR031127 GO:0004842|GO:0016567
Seca12g04264 504 CDD Rcat_RBR_unk 356 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04264 Seca-Chr12 116645100 116649381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04264 42 390 C3H Transcription Factor Family AT2G19610 27.273 2.38e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04264 - - gmx:100783040 846.269