Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04259 ATGGTTGCCGCCAAGAAAACCAAGAAGACACATGAGAGCATTAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATATACCCTCGGTTACAAAACCGTTCTCAAATCCCTAAGGAGCTCCAAAGGGAAACTGATTATCATTGCCAACAACTGTCCCCCATTGAGGAAGTCAGAAATAGAATACTATGCCATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAATAATGTTGATTTGGGCACTGCATGCGGAAAATATTACAGAGTGTGCTGCCTCAGCATTATTGATCCTGGTGATTCGGATATCATCAAGACACTGCCTGGCGAACAGTAA 339 0.4366 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGEQ. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04259 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Seca12g04259 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Seca12g04259 112 Gene3D - 2 108 IPR029064 -
Seca12g04259 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Seca12g04259 112 FunFam 60S ribosomal protein L30 2 108 - -
Seca12g04259 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
Seca12g04259 112 PANTHER RIBOSOMAL PROTEIN L30 1 110 IPR039109 GO:0003723
Seca12g04259 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04259 Seca-Chr12 116271767 116274690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04259 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 87.500 5.09e-72 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04259 K02908 - gmx:100806260 229.95