Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04258 ATGGAAAGAGACGGTTACAGAAACAGAGGCCGAGGCCGTGGCCACAATGGTGGTGGCAGAGGCAGAGGGTTTAATCAGCCACAAAACCAACAATCTGCTAGTGATGGTGGCCGTGGTGGTGGCGGTGGTGGCGGCGGTGACGGTGGCTATGGTGGCCGTGGCCGTGGCCGTGGCAGAGGCTTTCCTCCTCAATCGCAACAACAATTATGGCAGCAAAAGACAAATCCAACTTCCTCTTCCTCTTCCTCCGGTCAAATTCACAGTGGATCTTCAAACCCTCCTCCTCCACCTCCTCAAATCCAAACTCTTCCAGATGTTGAGAATCTGAAAATTGATCCGTCAGTGGAGAAGCTTACACCTGTTCACAGGCCTGACCAGGGAGGAACTATAGCAATTCGAAAGTGCAATCTTCGTGTGAATCATTTCCCTGTCATGTTCAATCCAAAGAGCATAATCATGCACTACAATGTGGATGTGAAGACCACATTACCACCGAAAAATAATAGGCCCAAGAAGATTTCGAGGTCTGACTTGTCGATGATTAGGGAAAAGCTGTTTTCCGATCATCCCCAGCGGTTACCGTTGTTGAAGACCGCATACGACGGTGAAAAGAACATCTTCAGTGCGGTGCCATTGCCTGAAGAAACCTTCACTGTGGAGGTCTCAAAAGGAGAAGACGAAAGGGCCGTTTCTTATACGGTTACTCTGACGCTGGTGAATAAGCTTGAGCTTCGCAAGTTGAAGGATTATCTTAGTGGCAGTGTGTTTTCCATTCCTAGGGACATTTTACAAGGGATGGACTTGGTGGTGAAGGAGAATCCTGCTAGGCGTACGGTTTCTCTTGGGCGATGCTATTTTCCCATGAATCCTCCATTGGTAAAAAGGGATCTTGAGCCTGGCATTATTGCAATAGGAGGGTTTCAGCACAGTCTCAAGACCACCTCTCAGGGTTTGTCCTTATGTCTTGACTATTCTGTTCTTTCATTTAGAAAGAAATTGTCAGTGTTAGATTTCCTTCATGAGCATATTCAGGGTTTCAATTTGAATGATTTTTGGAGATTTAAGAAATATGTTGAGCAAGCACTTATTGGGTTGAAGGTGAATGTGACCCACAGAAGAACCAAGCAGAAATACACTATTGCCAAGTTAACACCTAAGACCACAAGGCATATTGATTTCGCTATTTTGGATCCTGAGGGGAAGAATCCCCCGAGGACCATGACTCTTGTTGACTACTTTAGAGATAAGTATGGCGTGGACATTCAACACAAGGATATTCCTGCCTTGGATTTTGGAGGAAACAAGACGAATTATGTGCCTATGGAGTTGTGTGTCTTGGTTGAGGGTCAGAGATTCCCTAAAGAGTATTTGGACAGAGATGCTAGTAGGGAATTGAAAAATATGTCCTTGGCTCGTCCAAGGGAGAGGGAATCTGCAATAAACATGATGATGAAGTCAAGTGATGGACCGTGCGGCGGTGGTATTCTTCAGAATTTTGGAATGAATGTCAACACTTCCATGACAAATGTGACAGGACGTGTAATTGGGCCCCCAATATTGAAGTTAGGTAATCCAAATGGCACGACCAGTAGTATGCCTCTGAATACAGAGAAACGTGACTGGAATCTAGTTGGAAAATCGATGGTGGAAGGCAAGCCAGTTGAGTATTGGGGTATTCTTGATTTTACCAGCAATGGTCGATACAAATTTAGAGCCGATCAATTCATTCCAAAGTTTATGGATAAGTACAGAAAATTGGGAATTGACATGAAGGAGCCAGTTTGCAAGGAATATTCTGACATGCGGATACTTGGGAATTATAATTTACTGTATGAATTGCTTGAAAAAATTCATAACAAGGTTCAAAAGAAATGTCGACAACGGCTGCAATTTCTTCTTTGTGTGATGTCCAGCAAAGATCAAGGTTACAAGAGCCTCAAGTGGATTGCTGAGACCAAGGTTGGCATAGTAACACAATGCTGCTTATCTAGTAATTTTAATGAAGGGAAAGACCAAAATCTCACAAATCTTGCTCTCAAGATAAATGCAAAAATTGGAGGCAGTAATGTGGAGCTCATTAATAGGCTCCCACACTTTGAGGGTGAAGGTCATGTTATGTTCATAGGGGCTGATGTGAATCACCCAGCTTCCCGAGACACCAATAGTCCATCAATTACTGCTGTGGTTGCCACTATTAACTGGCCTGCTGCAAATCGCTATGCAGCACGTGTTTGTGCTCAAGAACATAGAAAGGAGAAAATTTTGAATTTTGGATTAATTTGCCTTGATCTTGTTACATATTATGAAAAGTTGAACAGAGTCAGGCCTGAAAAAATTGTGATCTTTCGTGATGGTGTGAGTGAGAGCCAATTTCACATGGTTCTTACAGAGGAGCTGCAAGATTTGAAGGCAGCATTTCATCGCTCAAATTACTTCCCAACCATCACTCTTATTGTAGCACAAAAGCGACATCAGACTCGATTGTTTCCTGCTGGTCCGAATGAGGGGACTCCCAGTGGTAATGTGTTGCCTGGAACTGTTGTGGATACAAAGGTCATACACCCTTTTGAATTTGACTTTTACCTTTGTAGTCACTATGGAAGCCTGGGTACAAGCAAGCCAACTCACTATCATGTCTTGTGGGATGAGCACAAGTTTACTTCTGATGCTTTGCAGAAACTCATATATGATACGTGCTTTACATTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTATACTATGCTGACCTTGCTGCGTATAGAGGACGACTATACTACGAAGCAAGGATTTGGGTGCAATCTCCAGATTCAGCTGCATCTTCATCATCACCTATGGCTTCTTCATCACTTTCTTCAACAGCCTCAAATTTCATTGATCCGGGGTATTACAAGTTGCATCCTGATATGGAAAACATAATGTTCTTTGTCTGA 2940 0.434 MERDGYRNRGRGRGHNGGGRGRGFNQPQNQQSASDGGRGGGGGGGGDGGYGGRGRGRGRGFPPQSQQQLWQQKTNPTSSSSSSGQIHSGSSNPPPPPPQIQTLPDVENLKIDPSVEKLTPVHRPDQGGTIAIRKCNLRVNHFPVMFNPKSIIMHYNVDVKTTLPPKNNRPKKISRSDLSMIREKLFSDHPQRLPLLKTAYDGEKNIFSAVPLPEETFTVEVSKGEDERAVSYTVTLTLVNKLELRKLKDYLSGSVFSIPRDILQGMDLVVKENPARRTVSLGRCYFPMNPPLVKRDLEPGIIAIGGFQHSLKTTSQGLSLCLDYSVLSFRKKLSVLDFLHEHIQGFNLNDFWRFKKYVEQALIGLKVNVTHRRTKQKYTIAKLTPKTTRHIDFAILDPEGKNPPRTMTLVDYFRDKYGVDIQHKDIPALDFGGNKTNYVPMELCVLVEGQRFPKEYLDRDASRELKNMSLARPRERESAINMMMKSSDGPCGGGILQNFGMNVNTSMTNVTGRVIGPPILKLGNPNGTTSSMPLNTEKRDWNLVGKSMVEGKPVEYWGILDFTSNGRYKFRADQFIPKFMDKYRKLGIDMKEPVCKEYSDMRILGNYNLLYELLEKIHNKVQKKCRQRLQFLLCVMSSKDQGYKSLKWIAETKVGIVTQCCLSSNFNEGKDQNLTNLALKINAKIGGSNVELINRLPHFEGEGHVMFIGADVNHPASRDTNSPSITAVVATINWPAANRYAARVCAQEHRKEKILNFGLICLDLVTYYEKLNRVRPEKIVIFRDGVSESQFHMVLTEELQDLKAAFHRSNYFPTITLIVAQKRHQTRLFPAGPNEGTPSGNVLPGTVVDTKVIHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFTSDALQKLIYDTCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEARIWVQSPDSAASSSSPMASSSLSSTASNFIDPGYYKLHPDMENIMFFV. 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04258 979 SMART Piwi_a_2 631 930 IPR003165 GO:0003676
Seca12g04258 979 Pfam PAZ domain 349 463 IPR003100 GO:0005515
Seca12g04258 979 Pfam N-terminal domain of argonaute 133 269 IPR032474 -
Seca12g04258 979 SUPERFAMILY Ribonuclease H-like 615 930 IPR012337 -
Seca12g04258 979 Gene3D paz domain 328 452 - -
Seca12g04258 979 MobiDBLite consensus disorder prediction 22 36 - -
Seca12g04258 979 MobiDBLite consensus disorder prediction 61 89 - -
Seca12g04258 979 ProSiteProfiles Piwi domain profile. 631 930 IPR003165 GO:0003676
Seca12g04258 979 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 133 932 - -
Seca12g04258 979 CDD PAZ_argonaute_like 334 447 - -
Seca12g04258 979 Pfam Argonaute linker 1 domain 281 331 IPR014811 -
Seca12g04258 979 Gene3D - 701 979 IPR036397 GO:0003676
Seca12g04258 979 Gene3D - 514 693 - -
Seca12g04258 979 SUPERFAMILY PAZ domain 329 485 IPR036085 GO:0005515
Seca12g04258 979 CDD Piwi_ago-like 495 929 IPR045246 -
Seca12g04258 979 SMART DUF1785_2 279 332 IPR014811 -
Seca12g04258 979 Pfam Piwi domain 632 929 IPR003165 GO:0003676
Seca12g04258 979 ProSiteProfiles PAZ domain profile. 357 448 IPR003100 GO:0005515
Seca12g04258 979 SMART PAZ_2_a_3 333 471 IPR003100 GO:0005515
Seca12g04258 979 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04258 Seca-Chr12 116265459 116270318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04258 55 949 Eukaryotic Initiation Factors Gene Family AT1G48410 33.637 2.48e-149 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04258 K11593 - gmx:100805250 1336.63