Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04243 ATGAAAGAGGGTGGTAGGAAACAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTTCTCCGCAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCTTATTTCCCAGCTGATGAGCCCCAGAAGTTTGCAAATGTGCACAAAGTGTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAAAGAGGGGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGGGTGAGAGACCCTGTGTATGGGTGTGTAGGGGCCATTTCATCACTTCAGCAACAGATTGATGTGTTACAGACCCAATTGGCAGTGGCCCAGGCTGAGGCAGTGCACCTTAGGGTGCGCCAAACTGCATCACTCTGGAACCAAGGTCATAGCCCCACTAGCCCAACCTATAGTGGCTCACCATCATCCAAGATCATTGAATCACAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCACACTGGCTATGGTGATTCAATGTGGTAA 510 0.498 MKEGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASLWNQGHSPTSPTYSGSPSSKIIESQAKPIFDMDMVVDHTGYGDSMW. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04243 169 Coils Coil 92 112 - -
Seca12g04243 169 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Seca12g04243 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 126 - -
Seca12g04243 169 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04243 Seca-Chr12 115783687 115790068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04243 1 169 AS2 family AT1G31320 76.471 9.78e-77 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca12g04243 LOB 6.3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04243 - - gmx:100306560 291.197