Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04241 ATGTGTATCGTCCATTCCAATTCCATGGAGCTAGAGGTAAAGGTGGTGGGGGGAATAGATAACTGTTTTGTATCCCTTCCCCTACCTCTAATTCAGACTCTACAGTCCACACGATCAGTTCCGCTTCCTGAAATTCTCGCTCTCGAGCTTCGTTCTTCCACTCAACCCCCTCACATCTGGTTCGTCGCTTGGTCTGGTGCCACTTCAGCTTCTTCCGCCATAGAGGTTTCTCAACAATTTGCTGAATGCGTTTCATTGCCGAATCATGCTGCAGTTCAAGTGAGAGTTGCTTCTAACGTGCCACATGCTTCTCTGGTCACGATAGAGCCACACACGGAAGATGACTGGGAAATATTGGAACTCAACTCAGACCAAGCTGAGGCTAAAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAAATTTCCTTTGTGGTTGCATGGTCACATTGTCATAACATTCCACGTGGCTTCTGTTTTTCCGAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGCTGTTGCTCCAAAAAGGCGCAAAAGAATTTCGGATTCAGCAGGAGATTCACATCTAGACTCCTGTAGTAAAGGGCATACTGCAAAGATGCTGCTTCGTCTACAAGATCCAGATGGGTTATGTCATACTAGTACTAATGTTAAAGGTGTTGAGCTTCATGTAGGGCTTACTTCTGTTGCTTTTGTTCATCCAGAAACAGCCAAGCACTTCTCATTTAACATTCTTCAGTTGGTTTCCATAGTGCCAAGAGTATCAAAGGCAAATGTTAATATTTCCAGAACCAATATTATGAAAGGCAAAGGTGGTTCAACTGTTAATGAAGTTGAGAAAGGAAATACTGACAAGAAAGAACATCGACAAGCAATTGTTCATCTGTTGTTTTCAGAATCTGTGGCTGAAGGACATGTAATGGTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTAGTTTGGAAAGAAGTATTCCTTCCATCTCTCTTTTTCCTTGCCAATTCAAACTGTTAAGGCAGGAGAATGCTGTTGAGAAAGATGGTCAAGAAGTTTTCCCGGGCCACAAGAATCACATTGATGAAAAATTGCATGCAAAAGCTACCTCAGGTGTCTTTGTGGATACTACAGATTGGTCAATCCACAATGAGGTTGTTGCAGCTCTTTCTGATGATCCCAATTACAAAGTAGAGGAAGAGACTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGTGTCTTGCACAACTATGGTATATTGCACAGCTTGAGGCAATCACTTCCATTATGGGTATGGAGGTTAATTCATTGGTTATGGGTAATATAACCTTGCTTCATTTTGAATTAAACTGTTACAAGCTTGGGAGAGATGGGAAGGTTCAGCTGACTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCTGAAATGTTATTTTTATTGACCTTTGGTGAGGAATATCTGCATCATGGGAAACTTAATGCATACAAAGTTTCCCTTGGTGGAAGACTCAATAGTATCAATGTTGGGGATCTGAAGCTTTTTGAAAGATTGAAATTGGGTGATCCTGTCTCTATTCATTCTATAGAAGAGAGAGCCTCTGAAGACCACATTAGTTCAAATGTATCCTTCCTTGGCTGGATGGAGAAAACTGCATCTGATGTTATCAATAGGGCGTTGGTATTGTTATCTTCAGCATCTGGTTTGTGGTTTGGCTCATACAACCTGCCACTTCCTGGACATGTTCTAATATATGGACCTCCAGGCTCTGGAAAAACTATATTAGCAAGGACCGTGGCAAAATCCCTTGAGAATCGTGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATTATTCGCCAAGAACTTGCAAATCATATAACTGAAGCTTTAATGCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCTCTGACTCCGAAGGATCTCAGGCTTCAATATCTGTTGCTGGACTTGCTGATTTTCTTGTTGATATCATGGATGAATATGGGGAGAAGAGGCGAAAATCATGTGGATTTGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAACATTCCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAAAGGCGTCACTTGCAATGTGATGATGAGATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTACCATTTAATGCCACCATTTATGAGCATGAGAATCCTGCTTTATTAAGGGAGGATTTCTCTGAGGCAATGCATGATTTTCTTCCTGTTGCAATGCGTGACATCACAAAATCTGCTTCTGATGATGGCCGTTCTGGATGGGACGATGTGGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATAGAGTTACCATCAAAGTTTCCAAAAACTTTTGCTCAAGCACCTTTGAGGCTGCGGTCAAATGTCCTTTTATATGGCCCTCCTGGTTGTGGCAAAACTCATATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCAGCAGCTCCATGTCTACTGTTTTTTGATGAATTTGATTCTATTGCTCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTTTGACCGAGTTAGATGGTGTTGAGGTTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATTTACTTGATGCAGCGCTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACTGTGCTTTCTAGAAAGTTGCCAATGGCCAATGATATTGATTTGGCTACAGTAGCTAATATGACTGAGGGATTCAGTGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCACAGCTTGCAGCAGTTCATGATATTCTGGACAACGTGGACGCCTATCAGCCAGAGAAAACCCCAGTTATCACTGATGCTCTTCTTAAGTTCACTGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAAGGAAGACTCTACAGTATTTATCGCCAGTTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGGTTTTTCCCTCTCCCTCTCTCTTCTCCCCCCCCCCCCCCCCCCAGTGTCTGTGTTTCTGTTAA 3438 0.4244 MCIVHSNSMELEVKVVGGIDNCFVSLPLPLIQTLQSTRSVPLPEILALELRSSTQPPHIWFVAWSGATSASSAIEVSQQFAECVSLPNHAAVQVRVASNVPHASLVTIEPHTEDDWEILELNSDQAEAKILNQVRIVHEGMKFPLWLHGHIVITFHVASVFPKNAVVQLMPGTEVAVAPKRRKRISDSAGDSHLDSCSKGHTAKMLLRLQDPDGLCHTSTNVKGVELHVGLTSVAFVHPETAKHFSFNILQLVSIVPRVSKANVNISRTNIMKGKGGSTVNEVEKGNTDKKEHRQAIVHLLFSESVAEGHVMVAKSLRLYLRASLHSWVYLKACDISLERSIPSISLFPCQFKLLRQENAVEKDGQEVFPGHKNHIDEKLHAKATSGVFVDTTDWSIHNEVVAALSDDPNYKVEEETANQSQNQKGLQCLAQLWYIAQLEAITSIMGMEVNSLVMGNITLLHFELNCYKLGRDGKVQLTYNSSENSGKAAEMLFLLTFGEEYLHHGKLNAYKVSLGGRLNSINVGDLKLFERLKLGDPVSIHSIEERASEDHISSNVSFLGWMEKTASDVINRALVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDILAHIIFVSCSKLALEKVPIIRQELANHITEALMHAPSIVIFDDLDSIISTSDSEGSQASISVAGLADFLVDIMDEYGEKRRKSCGFGPIAFIASIQSLENIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLQCDDEILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPFNATIYEHENPALLREDFSEAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLATVANMTEGFSGADLQALLSDAQLAAVHDILDNVDAYQPEKTPVITDALLKFTASKARPSVSEEEKGRLYSIYRQFLDSKRSVAAQVFPSPSLFSPPPPPQCLCFC. 1146
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04241 1145 Gene3D - 845 1104 IPR027417 -
Seca12g04241 1145 Gene3D - 544 744 IPR027417 -
Seca12g04241 1145 SUPERFAMILY Cdc48 domain 2-like 101 179 IPR029067 -
Seca12g04241 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1108 IPR027417 -
Seca12g04241 1145 Pfam AAA+ lid domain 1036 1073 IPR041569 -
Seca12g04241 1145 FunFam Peroxisome biogenesis factor 1 101 180 - -
Seca12g04241 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 824 IPR027417 -
Seca12g04241 1145 CDD RecA-like_PEX1_r2 855 1012 - -
Seca12g04241 1145 Gene3D - 745 825 - -
Seca12g04241 1145 Pfam Peroxisome biogenesis factor 1, N-terminal 106 179 IPR015342 GO:0005524|GO:0005777|GO:0007031
Seca12g04241 1145 FunFam Peroxisome biogenesis protein 1 550 744 - -
Seca12g04241 1145 Pfam ATPase family associated with various cellular activities (AAA) 884 1011 IPR003959 GO:0005524|GO:0016887
Seca12g04241 1145 Pfam ATPase family associated with various cellular activities (AAA) 597 742 IPR003959 GO:0005524|GO:0016887
Seca12g04241 1145 Gene3D - 101 180 - -
Seca12g04241 1145 FunFam Peroxisome biogenesis protein 1 745 825 - -
Seca12g04241 1145 FunFam Nuclear valosin-containing protein-like 842 1020 - -
Seca12g04241 1145 Gene3D - 1015 1094 - -
Seca12g04241 1145 ProSitePatterns AAA-protein family signature. 984 1002 IPR003960 GO:0005524|GO:0016887
Seca12g04241 1145 SMART AAA_5 880 1016 IPR003593 GO:0016887
Seca12g04241 1145 SMART AAA_5 593 745 IPR003593 GO:0016887
Seca12g04241 1145 SUPERFAMILY ADC-like 18 98 IPR009010 -
Seca12g04241 1145 PANTHER AAA-FAMILY ATPASE 229 1110 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g04241 Seca-Chr12 115653961 115672968 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04241 594 814 Calmodulin-binding Proteins AT3G56690 29.279 5.44e-14 75.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04241 K13338 - gmx:100803882 1933.3