Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g04241 | ATGTGTATCGTCCATTCCAATTCCATGGAGCTAGAGGTAAAGGTGGTGGGGGGAATAGATAACTGTTTTGTATCCCTTCCCCTACCTCTAATTCAGACTCTACAGTCCACACGATCAGTTCCGCTTCCTGAAATTCTCGCTCTCGAGCTTCGTTCTTCCACTCAACCCCCTCACATCTGGTTCGTCGCTTGGTCTGGTGCCACTTCAGCTTCTTCCGCCATAGAGGTTTCTCAACAATTTGCTGAATGCGTTTCATTGCCGAATCATGCTGCAGTTCAAGTGAGAGTTGCTTCTAACGTGCCACATGCTTCTCTGGTCACGATAGAGCCACACACGGAAGATGACTGGGAAATATTGGAACTCAACTCAGACCAAGCTGAGGCTAAAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAAATTTCCTTTGTGGTTGCATGGTCACATTGTCATAACATTCCACGTGGCTTCTGTTTTTCCGAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGCTGTTGCTCCAAAAAGGCGCAAAAGAATTTCGGATTCAGCAGGAGATTCACATCTAGACTCCTGTAGTAAAGGGCATACTGCAAAGATGCTGCTTCGTCTACAAGATCCAGATGGGTTATGTCATACTAGTACTAATGTTAAAGGTGTTGAGCTTCATGTAGGGCTTACTTCTGTTGCTTTTGTTCATCCAGAAACAGCCAAGCACTTCTCATTTAACATTCTTCAGTTGGTTTCCATAGTGCCAAGAGTATCAAAGGCAAATGTTAATATTTCCAGAACCAATATTATGAAAGGCAAAGGTGGTTCAACTGTTAATGAAGTTGAGAAAGGAAATACTGACAAGAAAGAACATCGACAAGCAATTGTTCATCTGTTGTTTTCAGAATCTGTGGCTGAAGGACATGTAATGGTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTAGTTTGGAAAGAAGTATTCCTTCCATCTCTCTTTTTCCTTGCCAATTCAAACTGTTAAGGCAGGAGAATGCTGTTGAGAAAGATGGTCAAGAAGTTTTCCCGGGCCACAAGAATCACATTGATGAAAAATTGCATGCAAAAGCTACCTCAGGTGTCTTTGTGGATACTACAGATTGGTCAATCCACAATGAGGTTGTTGCAGCTCTTTCTGATGATCCCAATTACAAAGTAGAGGAAGAGACTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGTGTCTTGCACAACTATGGTATATTGCACAGCTTGAGGCAATCACTTCCATTATGGGTATGGAGGTTAATTCATTGGTTATGGGTAATATAACCTTGCTTCATTTTGAATTAAACTGTTACAAGCTTGGGAGAGATGGGAAGGTTCAGCTGACTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCTGAAATGTTATTTTTATTGACCTTTGGTGAGGAATATCTGCATCATGGGAAACTTAATGCATACAAAGTTTCCCTTGGTGGAAGACTCAATAGTATCAATGTTGGGGATCTGAAGCTTTTTGAAAGATTGAAATTGGGTGATCCTGTCTCTATTCATTCTATAGAAGAGAGAGCCTCTGAAGACCACATTAGTTCAAATGTATCCTTCCTTGGCTGGATGGAGAAAACTGCATCTGATGTTATCAATAGGGCGTTGGTATTGTTATCTTCAGCATCTGGTTTGTGGTTTGGCTCATACAACCTGCCACTTCCTGGACATGTTCTAATATATGGACCTCCAGGCTCTGGAAAAACTATATTAGCAAGGACCGTGGCAAAATCCCTTGAGAATCGTGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATTATTCGCCAAGAACTTGCAAATCATATAACTGAAGCTTTAATGCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCTCTGACTCCGAAGGATCTCAGGCTTCAATATCTGTTGCTGGACTTGCTGATTTTCTTGTTGATATCATGGATGAATATGGGGAGAAGAGGCGAAAATCATGTGGATTTGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAACATTCCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAAAGGCGTCACTTGCAATGTGATGATGAGATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTACCATTTAATGCCACCATTTATGAGCATGAGAATCCTGCTTTATTAAGGGAGGATTTCTCTGAGGCAATGCATGATTTTCTTCCTGTTGCAATGCGTGACATCACAAAATCTGCTTCTGATGATGGCCGTTCTGGATGGGACGATGTGGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATAGAGTTACCATCAAAGTTTCCAAAAACTTTTGCTCAAGCACCTTTGAGGCTGCGGTCAAATGTCCTTTTATATGGCCCTCCTGGTTGTGGCAAAACTCATATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCAGCAGCTCCATGTCTACTGTTTTTTGATGAATTTGATTCTATTGCTCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTTTGACCGAGTTAGATGGTGTTGAGGTTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATTTACTTGATGCAGCGCTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACTGTGCTTTCTAGAAAGTTGCCAATGGCCAATGATATTGATTTGGCTACAGTAGCTAATATGACTGAGGGATTCAGTGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCACAGCTTGCAGCAGTTCATGATATTCTGGACAACGTGGACGCCTATCAGCCAGAGAAAACCCCAGTTATCACTGATGCTCTTCTTAAGTTCACTGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAAGGAAGACTCTACAGTATTTATCGCCAGTTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGGTTTTTCCCTCTCCCTCTCTCTTCTCCCCCCCCCCCCCCCCCCAGTGTCTGTGTTTCTGTTAA | 3438 | 0.4244 | MCIVHSNSMELEVKVVGGIDNCFVSLPLPLIQTLQSTRSVPLPEILALELRSSTQPPHIWFVAWSGATSASSAIEVSQQFAECVSLPNHAAVQVRVASNVPHASLVTIEPHTEDDWEILELNSDQAEAKILNQVRIVHEGMKFPLWLHGHIVITFHVASVFPKNAVVQLMPGTEVAVAPKRRKRISDSAGDSHLDSCSKGHTAKMLLRLQDPDGLCHTSTNVKGVELHVGLTSVAFVHPETAKHFSFNILQLVSIVPRVSKANVNISRTNIMKGKGGSTVNEVEKGNTDKKEHRQAIVHLLFSESVAEGHVMVAKSLRLYLRASLHSWVYLKACDISLERSIPSISLFPCQFKLLRQENAVEKDGQEVFPGHKNHIDEKLHAKATSGVFVDTTDWSIHNEVVAALSDDPNYKVEEETANQSQNQKGLQCLAQLWYIAQLEAITSIMGMEVNSLVMGNITLLHFELNCYKLGRDGKVQLTYNSSENSGKAAEMLFLLTFGEEYLHHGKLNAYKVSLGGRLNSINVGDLKLFERLKLGDPVSIHSIEERASEDHISSNVSFLGWMEKTASDVINRALVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDILAHIIFVSCSKLALEKVPIIRQELANHITEALMHAPSIVIFDDLDSIISTSDSEGSQASISVAGLADFLVDIMDEYGEKRRKSCGFGPIAFIASIQSLENIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLQCDDEILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPFNATIYEHENPALLREDFSEAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLATVANMTEGFSGADLQALLSDAQLAAVHDILDNVDAYQPEKTPVITDALLKFTASKARPSVSEEEKGRLYSIYRQFLDSKRSVAAQVFPSPSLFSPPPPPQCLCFC. | 1146 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g04241 | 1145 | Gene3D | - | 845 | 1104 | IPR027417 | - | |
Seca12g04241 | 1145 | Gene3D | - | 544 | 744 | IPR027417 | - | |
Seca12g04241 | 1145 | SUPERFAMILY | Cdc48 domain 2-like | 101 | 179 | IPR029067 | - | |
Seca12g04241 | 1145 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 846 | 1108 | IPR027417 | - | |
Seca12g04241 | 1145 | Pfam | AAA+ lid domain | 1036 | 1073 | IPR041569 | - | |
Seca12g04241 | 1145 | FunFam | Peroxisome biogenesis factor 1 | 101 | 180 | - | - | |
Seca12g04241 | 1145 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 578 | 824 | IPR027417 | - | |
Seca12g04241 | 1145 | CDD | RecA-like_PEX1_r2 | 855 | 1012 | - | - | |
Seca12g04241 | 1145 | Gene3D | - | 745 | 825 | - | - | |
Seca12g04241 | 1145 | Pfam | Peroxisome biogenesis factor 1, N-terminal | 106 | 179 | IPR015342 | GO:0005524|GO:0005777|GO:0007031 | |
Seca12g04241 | 1145 | FunFam | Peroxisome biogenesis protein 1 | 550 | 744 | - | - | |
Seca12g04241 | 1145 | Pfam | ATPase family associated with various cellular activities (AAA) | 884 | 1011 | IPR003959 | GO:0005524|GO:0016887 | |
Seca12g04241 | 1145 | Pfam | ATPase family associated with various cellular activities (AAA) | 597 | 742 | IPR003959 | GO:0005524|GO:0016887 | |
Seca12g04241 | 1145 | Gene3D | - | 101 | 180 | - | - | |
Seca12g04241 | 1145 | FunFam | Peroxisome biogenesis protein 1 | 745 | 825 | - | - | |
Seca12g04241 | 1145 | FunFam | Nuclear valosin-containing protein-like | 842 | 1020 | - | - | |
Seca12g04241 | 1145 | Gene3D | - | 1015 | 1094 | - | - | |
Seca12g04241 | 1145 | ProSitePatterns | AAA-protein family signature. | 984 | 1002 | IPR003960 | GO:0005524|GO:0016887 | |
Seca12g04241 | 1145 | SMART | AAA_5 | 880 | 1016 | IPR003593 | GO:0016887 | |
Seca12g04241 | 1145 | SMART | AAA_5 | 593 | 745 | IPR003593 | GO:0016887 | |
Seca12g04241 | 1145 | SUPERFAMILY | ADC-like | 18 | 98 | IPR009010 | - | |
Seca12g04241 | 1145 | PANTHER | AAA-FAMILY ATPASE | 229 | 1110 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g04241 | Seca-Chr12 | 115653961 | 115672968 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g04241 | 594 | 814 | Calmodulin-binding Proteins | AT3G56690 | 29.279 | 5.44e-14 | 75.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g04241 | K13338 | - | gmx:100803882 | 1933.3 |