Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04239 ATGTCTTTTCCCAGGTCAAGTAGAAGAGTTGGTAGTCGTAGAGTTGCAGTAGAAAATCGAGCCACATTCCCACCACTGTCAATTCCTACAACAAATTTGCAAAGGGGTGGAGTTAAGCCACTTTCAGGAAAACCATACTATCATGTGGTTCTTTCAAAATCACATGTTAGTCCTCCTTATGTAATGCAGGGGCCGTCTGCCAAGTTATACTCAAAACTTCCTTCTCAAGTGGTCCCTACTGTTCTCAAATATGGAGGCAAGAGCTGGAAAATGACTTATAATGGACAAAGCACAGATCGCAAGAGGTTTACTTGCAAAGGCTGGGGAAAATTTGTTGAAGATAATTGTTTGAAGGTTGGAGACGCATGCATCTTTGAGCTCATGGAAAAGAGTACTGAAGAGAAAGTCATCTTCCAAGTTCAAATTCTTAGAGGTGACCTCCCATTCAAATTTCATGAAATTGGTGAGAGTGCAGAAAACCCAATTGTCTTTTGA 495 0.4101 MSFPRSSRRVGSRRVAVENRATFPPLSIPTTNLQRGGVKPLSGKPYYHVVLSKSHVSPPYVMQGPSAKLYSKLPSQVVPTVLKYGGKSWKMTYNGQSTDRKRFTCKGWGKFVEDNCLKVGDACIFELMEKSTEEKVIFQVQILRGDLPFKFHEIGESAENPIVF. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04239 164 Gene3D - 38 146 IPR015300 -
Seca12g04239 164 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 44 152 IPR044837 -
Seca12g04239 164 SMART B3_2 47 141 IPR003340 GO:0003677
Seca12g04239 164 Pfam B3 DNA binding domain 78 138 IPR003340 GO:0003677
Seca12g04239 164 ProSiteProfiles B3 DNA-binding domain profile. 86 146 IPR003340 GO:0003677
Seca12g04239 164 CDD B3_DNA 45 144 IPR003340 GO:0003677
Seca12g04239 164 SUPERFAMILY DNA-binding pseudobarrel domain 43 144 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04239 Seca-Chr12 115613997 115617146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04239 47 146 REM Transcription Factor Family AT4G33280 27.000 9.26e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca12g04239 B3 7.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04239 - - tpra:123884363 173.711