Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04223 ATGGAATGGGTCCAAAGTTTCCCGCGCATGCTTGTAGTTATGTTTGCTAAAGTGAAGTTATACAAAGGAGAGGTCGTGCTGCAAAACGTTCTTAATACTACTAAGATTTTATGCAACACTCAGATATCTGAAGTGGATGAATTTCGGAACGGGGCTGTTGTGCATGGGATTGATATATTAGCACCGATGAGTGTCATTGCTGACGATTACAACAACAGTCCTCCAAAGGACGAGTTTCTGAAGGCGCACCCAAGGAAGACCATAAAACAACTTCATGAGACCGAGGAGGATGGGTTCTTCATTGTGTTAGCTTCTATAGTCAGTGTGCTGAATGATGGTAATTGGTGGTACACTGCATGTAAGTGTCATCGTGCAGTGACCATGGATGGTGATAGGTATTATTGCTCCTCATGTGGCATTCATGTTCGAGATGTGTCTTCTAGATACAAGCTGAGAGTTGAGGTTTACGATGGAGATGATACTGTTGCATTTGTTCTTTTTGATAGTGACACTGAGATGTTAATTGGTCATAATTGCGCTGAATTATTGGCTATTATAAAGGACAAAAATGGTGATGAACTGCCTTCGGAGTTCAGCGATCTTGCTGGGAGGGAGGTTTTATTCAAAGTTGAAAAACCAGCTGACTATGCTTTTAAATTTGATGATTCATTCAGAGTTAAGCAGGTTTGTGATGACATTTGTATTATTGATCTCTTTAAGAATGAGGACAATATTGCAACTCCGGATGTTAGGGTTGCTCCTGTTCCTTTCCCGAGCTTGGATGAGATTGTAGAGTCGGCCAATGTTCAAGACACTGTTAAAGCAAAGGCTTCAAATCAAACAATCCTTGACTTGACTGTTATCCCAATGTAG 873 0.4101 MEWVQSFPRMLVVMFAKVKLYKGEVVLQNVLNTTKILCNTQISEVDEFRNGAVVHGIDILAPMSVIADDYNNSPPKDEFLKAHPRKTIKQLHETEEDGFFIVLASIVSVLNDGNWWYTACKCHRAVTMDGDRYYCSSCGIHVRDVSSRYKLRVEVYDGDDTVAFVLFDSDTEMLIGHNCAELLAIIKDKNGDELPSEFSDLAGREVLFKVEKPADYAFKFDDSFRVKQVCDDICIIDLFKNEDNIATPDVRVAPVPFPSLDEIVESANVQDTVKAKASNQTILDLTVIPM. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04223 290 CDD RPA1_DBD_C 86 210 IPR047192 -
Seca12g04223 290 Gene3D - 76 246 IPR012340 -
Seca12g04223 290 Pfam Replication factor-A C terminal domain 99 237 IPR013955 -
Seca12g04223 290 SUPERFAMILY Nucleic acid-binding proteins 83 240 IPR012340 -
Seca12g04223 290 PANTHER OS03G0429900 PROTEIN 12 211 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04223 Seca-Chr12 115491451 115494433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04223 99 210 Core DNA Replication Machinery Family AT5G08020 30.769 1.12e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04223 - - lja:Lj3g3v3527180.1 239.58