Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04220 ATGGACTTAAATAGTGATGATTCAGCTATTAATCTGGATGATGATAAAGACCTAAGTTATAGTGACTCTTCTAGTAGTGATAAAATCGGTAGTGAAAATGATAGAGATATTGATGAGGAGAATGTTGCTATGGAAGCATATGTTGGAGAGGATGTGTCAAGGAGGATGATTTATTTGACAACTGATGATATATGGCCTTTGAAGTTTTGTAGTGAAAATGATGCGTACACTTTTTACTTTTCTTATGCAAGATGTCATGGATTTTCTTTGAGGAGGGATGATGTACATCGAGACAGTAAAGGGATGCTCTTAATGCGACAATTTTTATGTACTAGGGCTTGTTTGAGGGACAAAAAGCATTTGATTAGGTTAGATCGAGAAAAGGTACGCAGACCTCTTACCTGTACCAATTGTCAAGTGAGTTGA 426 0.3638 MDLNSDDSAINLDDDKDLSYSDSSSSDKIGSENDRDIDEENVAMEAYVGEDVSRRMIYLTTDDIWPLKFCSENDAYTFYFSYARCHGFSLRRDDVHRDSKGMLLMRQFLCTRACLRDKKHLIRLDREKVRRPLTCTNCQVS. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04220 141 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g04220 141 MobiDBLite consensus disorder prediction 9 37 - -
Seca12g04220 141 Pfam FAR1 DNA-binding domain 77 139 IPR004330 -
Seca12g04220 141 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04220 Seca-Chr12 115451978 115452403 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04220 FAR1 1.6e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04220 - K17604 ccaj:109794460 111.694