Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04219 ATGTTGGGTGGGCTATATGGAGACTTACCTCCACCCTCTTCTTCCGAAGAAAAGAAACCAACCACCAATGTATGGTCCAGCAGCACCAAAATGGCCCCCGCCACCCTCCGCAAACCGGCCTCAATTTTCCAACCTCCACAGACCGTTCTGAGATCCCAGAACAAACCCAAAATTGTCAATTCTTCTTCGGTTCCCAAAACAGTGGTGTCGCCGGCACCAGTACCGGCTCCGGCAACGGACGACGTTGTGCAACCAGCTCTGGTGGGTGTTCAGTCGACGGTGATAGAGGAGTACGACCCGGCGAGGCCGAACGACTATGAGGAGTACCGGAGGGAGAAGAAGAGGAAGGCCAGGGAGGCGGAGATGATGAGGGAGCTTGAGAGGCGGCGCCAGGAGGAGGAAGAGGAGGAGCGAGAGAGGGAGAGGGAGAGAGAAAGGGAAAGAGAGAGAGATAGGGATTACGGCGATTCGAGGTTGAATATTTCCGGCGAAGAGGCGTGGAGGAGGCGGGCGGCAATGAGTGGCGGTGGTGGTGGTGGTGGTGGTGGCGGGGCGGTGCCGAGGTCTCCGTCGCCGCCGGGAAATGCGGATGGTTTTACCATTGGGAAGTCAGAGACGGGAGGGTTGGGAGTTGGTGCGGGTGGGCAGATGACTGCGGCTCAGAGAATGATGGCGAAGATGGGGTGGAAGGAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATTACTACTCCTTTGATGGCCAAGAAAACGGATAGACGAGCTGGGGTTATTGTCAATGCTAGTGACAATAGCAAGAAAGTGAAGAGTGTCAACTTCCATGGAGTGCCTACAAAGGTGCTGCTGCTTAGAAACATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGAAGAGGTAGGATCAGAATGTGCCAAGTATGGGACAGTAACTCGAGTTCTGATATTTGAGATCACAGAGCCAAATTTCCCTGCTGATGAAGCAGTAAGAATCTTTGTGCAGTTCGAGAGACCCGAAGAAACAACTAAAGCACTTATTGACCTTGATGGTCGGTACTTTGGGGGTAGAATAGTGCGTGCCTCATTTTATGATGAGGATAAGTTTGGCAAGAATGAGTTGGCTCCATTGCCTGGAGAAATTCCTGGCTTCTAA 1152 0.5347 MLGGLYGDLPPPSSSEEKKPTTNVWSSSTKMAPATLRKPASIFQPPQTVLRSQNKPKIVNSSSVPKTVVSPAPVPAPATDDVVQPALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMRELERRRQEEEEEERERERERERERERDRDYGDSRLNISGEEAWRRRAAMSGGGGGGGGGGAVPRSPSPPGNADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSKKVKSVNFHGVPTKVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPADEAVRIFVQFERPEETTKALIDLDGRYFGGRIVRASFYDEDKFGKNELAPLPGEIPGF. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04219 383 Pfam G-patch domain 219 258 IPR000467 GO:0003676
Seca12g04219 383 MobiDBLite consensus disorder prediction 100 165 - -
Seca12g04219 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 365 IPR000504 GO:0003723
Seca12g04219 383 ProSiteProfiles G-patch domain profile. 216 262 IPR000467 GO:0003676
Seca12g04219 383 PANTHER SPLICING FACTOR 45 SPF45 1 375 IPR040052 GO:0045292
Seca12g04219 383 Coils Coil 106 152 - -
Seca12g04219 383 MobiDBLite consensus disorder prediction 1 213 - -
Seca12g04219 383 SMART rrm2_1 280 361 IPR003954 GO:0003676
Seca12g04219 383 MobiDBLite consensus disorder prediction 15 34 - -
Seca12g04219 383 CDD RRM_UHM_SPF45 277 373 IPR034653 -
Seca12g04219 383 SUPERFAMILY RNA-binding domain, RBD 282 367 IPR035979 GO:0003676
Seca12g04219 383 Gene3D - 275 373 IPR012677 -
Seca12g04219 383 SMART G-patch_5 214 260 IPR000467 GO:0003676
Seca12g04219 383 MobiDBLite consensus disorder prediction 41 68 - -
Seca12g04219 383 FunFam Putative splicing factor 45 278 364 - -
Seca12g04219 383 PIRSF SPF45 3 380 IPR040052 GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04219 Seca-Chr12 115438836 115447465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04219 222 257 C2H2 Transcription Factor Family AT5G26610 61.111 1.23e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04219 K12840 - zju:107418861 496.123