Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04218 ATGGACTTTAATAGTGATGATTCAGCTGTTAATCTGGATGATGATAGGGACGTAAGTTATAGTGACTCTTCTAGCAGTCATGAAATGACTAGTGGAAATGATATACATAGTGATGAGGGAAATGAGTCTATTCACCCAGAGGCTGATATGGATGAGGAGAATGATGTTATGGATACTGATGTTAGAGACGGTGTGTCAAGGAGGATAATTGACTTGACAAATGATGATATAAGGGCTTTGGAGTTCGCTAGTGAAGAGCATGCGTTCAATTTTTACTTTTCTTATGCAAAATGTCAAGGTTTTGCTATGAGGAAGGATGATGTTATTCGAGACAAAAAAGAGATGGTCATAATGCGGCAGTATTTATGTAGTAGGGCTGGTCTGAGGGACAAAAAGCATTTGATTAGGTTAGATCGGAAAAAGGAACACAAACCCCTTACCCGTACCAATTGTCTAGCAAAGTTGAGAGTTAGGTTTGATTACAAGACGGGTAAATGGAAGGTTGTTTCATTTGAAGAATCTCACAACCATGATTTAACCCCTGCAAAGTTTGTACCTCTAATTCCTAATTATAGGGGATTGATTGATGGGGACAAATCCCAAGTGGATGCATTACATTCTCATGGCATTAGGCCTTGCCAGATTATGGGTTTTCTTGTTGATCAAAAAGGAGGGTATAGAAATGTTGGATTTTCAAAGAAAGATTTGTACAACTACATAGATGAGGTTAAACGTGGTAAGATAAACGATGGGATTGTTGTTGCTGGCTTAAGTTATTTGCAAGGAAAGGCGGATAATAATCCAATGTCTTTTTCAAGATTTTTATGTTCTGAGGATGGTAAACTTACTCATCTATTTTGGTGTGATGCAAATAGTCGTGCGGATTTTCATTTTTTTGGGGATGTGCTCACATTTGATGCAACATACAAGAAGAACAGATATAAATATCCATTGGTGATATTTTCTGGGAAAAATCATCACTCTCAAACAGTAATATTTGGGTGTGCACTCATTGCTGATGAAACAATTGATACTTATAAGTGGGTGCTAAGGATGTTTCTGGAAGCAATGTTCAACAAGCATCCAACAGCAGTGGTGACTGATGGAGATGGTGCTATGAGGGAAGCTATTAAGGCAGTATTTCCAAATGCCTCTCATAGGTTATGTGGGTGGCATTTGAATAAGAATGCATGTGAAAATGTTAAGAATCCAAAATTTTTGGATGATTTCAAGAAAGCAATGTATAGTAATTTCACTCCAAATCAATTTGAAGAGTTTTGGGAGGAAATGGTTAGCAAACATGGTCTACAAGGTAATAGGTGGGTTAAGAAAACCTATGATATCAAGGAAATGTGGGGCTCTGCCTATTTACGTGACAAATTCTTTGCTCGCATAAGAACGACATCTCAATGTGAAGGAATTAATTCACTAATAAAGGCTTATGTTAGGAGTAAGAATACGATTATAGAATTTATTCATAATTTTGAACATGCTCTTAGGGAATATAGGTACAAAGAATTGTTTTCTGACTTTAATTCTATTTATTTTGAACCTGTTCTTACTACCTCACTTCAGAAGATAGAGCGTCAAGCTTCTAAGGTGTTCACTTTGGATATTTTTAAAGATGTCAAGTATGAGATTGAAAGGGCAGGTGGTTTAAATGTAATTGAGCGTTCAATTGAAGGGGATAATGTTGTTTTCAAATTAAAAGAATATTGTAAGCCTCGTAGTGAACGCTTTGTTGTTTATGATAAAGAGAATTCTAAATTTGTTTGTGATTGTCGTCTGTTTGAATCTTGTGGCATTCCATGTCAACATATTTTTTGTGTTATGAGACTGGAGGACATAGATGCTATACCTCCATGTATGATTTGCAACCGATGGAGGAAGGATGATAAGAGTGACTTCATGATATCAGATGGTTTGGATGAGGTAGAACCTGACATGATGAGGGTTTGTCGTTTTGTGGTTACTAGCTCTCATTGTAACAGTCTTTGTGACATGGTTTCCCAAAAGCGTGAGCATTTTAAGGAGTTTATAAATGACATTATGAAGCTGAAACAGAAGTATGAGAGATTGTCTTCCAGTAGTAGCACAACTAATGTTGAGGAAAATGTTGTACAAGATCCCACAGTTGTGAAGAAGAAAGGTGCTCCTATGAAGATAAGGAAGAGGCGTAAGAGTAAGAGGTGTTCAAACTGTAACATTTCTGGACATGTTATCACAACCTGTCCTAGGTTGTTTCCACCAGAAGTTGATGAAGTCAACATTAATGACGAAGACCATGGTCTTGAGTCACAAACTCTTAGGAGGGATGCTGCCCAAGTAAATCCTAGTCGTTTTTATTATTCCAAAATTACTGTTTGTAAGTACATTTATATTATATGTAAATTTCACATTTTCCACTGTCTTATGCACCTTCATTTTTTGTTGCAGAATGATGATGGAATCTCATCAGATGAAAATTTCCCTGACAGTAGCTCTAATCATGTGTCTGGAAGCAATAGTCACAGTCAGAGTGTAATGTTTAGTGTTTTAATTTTATTTATTTTTATGTGTTTTTTTAATCTTTTACAATGTCATATAATGTTTTTTTATAAATTTGTTTAA 2610 0.3594 MDFNSDDSAVNLDDDRDVSYSDSSSSHEMTSGNDIHSDEGNESIHPEADMDEENDVMDTDVRDGVSRRIIDLTNDDIRALEFASEEHAFNFYFSYAKCQGFAMRKDDVIRDKKEMVIMRQYLCSRAGLRDKKHLIRLDRKKEHKPLTRTNCLAKLRVRFDYKTGKWKVVSFEESHNHDLTPAKFVPLIPNYRGLIDGDKSQVDALHSHGIRPCQIMGFLVDQKGGYRNVGFSKKDLYNYIDEVKRGKINDGIVVAGLSYLQGKADNNPMSFSRFLCSEDGKLTHLFWCDANSRADFHFFGDVLTFDATYKKNRYKYPLVIFSGKNHHSQTVIFGCALIADETIDTYKWVLRMFLEAMFNKHPTAVVTDGDGAMREAIKAVFPNASHRLCGWHLNKNACENVKNPKFLDDFKKAMYSNFTPNQFEEFWEEMVSKHGLQGNRWVKKTYDIKEMWGSAYLRDKFFARIRTTSQCEGINSLIKAYVRSKNTIIEFIHNFEHALREYRYKELFSDFNSIYFEPVLTTSLQKIERQASKVFTLDIFKDVKYEIERAGGLNVIERSIEGDNVVFKLKEYCKPRSERFVVYDKENSKFVCDCRLFESCGIPCQHIFCVMRLEDIDAIPPCMICNRWRKDDKSDFMISDGLDEVEPDMMRVCRFVVTSSHCNSLCDMVSQKREHFKEFINDIMKLKQKYERLSSSSSTTNVEENVVQDPTVVKKKGAPMKIRKRRKSKRCSNCNISGHVITTCPRLFPPEVDEVNINDEDHGLESQTLRRDAAQVNPSRFYYSKITVCKYIYIICKFHIFHCLMHLHFLLQNDDGISSDENFPDSSSNHVSGSNSHSQSVMFSVLILFIFMCFFNLLQCHIMFFYKFV. 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04218 869 MobiDBLite consensus disorder prediction 1 58 - -
Seca12g04218 869 ProSiteProfiles Zinc finger SWIM-type profile. 580 615 IPR007527 GO:0008270
Seca12g04218 869 Pfam MULE transposase domain 302 396 IPR018289 -
Seca12g04218 869 PANTHER OS01G0519700 PROTEIN 80 728 - -
Seca12g04218 869 SMART 26again6 590 617 IPR006564 GO:0008270
Seca12g04218 869 Pfam FAR1 DNA-binding domain 90 180 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04218 Seca-Chr12 115429223 115431832 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04218 MULE 4.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04218 - - ccaj:109792835 822.002