Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04215 ATGGAAGAAGTTTGTCTGAATAATGAGCCACTTTTTGATGAAAGTGATGAGTTTGATGTTGAGGGGAACTCTTCTGTAGTAGAACATGATCTTGAATCTTTAAACTCACAACCAAAGAACTCTCCATTTCCAACTGTGGGTCTGGAGTTTGATTCCTTTGAAGACGTTTACAACTTCTACAATATCTATGCAAAGGAACAAGGCTTTGGCATTAGAGTGAGCAATTCATGGTTTAGATCAAAGAGAAAAGAGCGCTATAGGGCAAAACTTAGCTGCAGTAGTGCTGGTTTCAAGAAAAAGAGTGAGGCCAATAATCCAAGACCAGAAACAAGAACTGGTTGTCCTGCAATGATAGTGATTAAAATGGTTGACTCCAAGAGATGGAGGATAGTGGAAGTTGAGCTTCAACACAACCATCATGTGAGTCCACAGAGCAAACGGTTCTACAAGTCACATAAGAAAATGATCCTTGCAGCCAGAAAATCACAACCACTGCCAGAGCCTGTAACAGAAGTACATACCATCAAGTTATATCGAACAACTGTCATGGATGTTAGTCAGAATGGTTACTCTAACTTTGAAGAAAGTAATGACACCAATTTTGATAAGTTTAAATATTTGGAACTTAGAGAAGGGGATGCCAATGCTATGTATAATTATTTTTGCCGAATGAAGTTGACCAATCCAAATTTCTTTTACTTGTTTGATATTGATGATGATGGGGGCCTAAAAAATGTGTTCTGGGCTGATTCCAGGTCAAGGGTTTCTTATAATTACTTCAATGACACTATTACCATAGACACAACTTGTTTGGCAAACAAATATGAGATCCCTTTGATATCATTTGTGGGTGTAAACCATCATGGACATTCTGTTCTATTGGGCTGTGGCTTCCTTGGACATGAATCAGTGGATTATTTTGTGTGGACATTCAAGGCATGGCTTGAGTGTATGCTTGGTCGTCCTCCGCAAGTCATTATTACTGATCAGTGCAAGCCCTTGCAAATTGCAGTTGCTCAGGTTTTCCCTCATGCTCGTCATTGTTATTCTTCACAGTATATCATGCAAAGAGTTCCAGAAAAGTTGGGAGGGTTGCAAGGGTATGAAGCAATCAGAAAGCATCTGTATAGTGCTGTCTATCAGTCATTGAAGATAAGTGAGTTTGAAACTTCTTGGGCTGATATGATTAAATGTTATGGACTTGGAGAAAACAAGTGGCTTCAGACATTACATAAAGATAGGCATCTGTGGGTTCCAGTTTACCTAAAAGACACTATTTTTATAGGACTGATCCCAACTAAAGAAAATGAGGGCCTGACTGCATTTTTTGATGGATATGTGCATAAACATACATCTTTCAAGGAATTTCTTGATAAGTATGACTTAGCTCTGCACAGAAAGCACTTGAAAGAAGCCATGGCTGATTTGGAGTCTAGACAATCAAGCTTTGAATTGAACACCAGATGTAATTTTGAGGTGCAGCTTTCCAAGGTGTATACAAAAGAAATCTTCAAAAAGTTTCAATTTGAGGTTGAGGGCATGTACTCTTGCTTCAACACAAGACAGGTAAGTGTTAATGGATCTATAATAACATATGTTGTGAAAGAACGAGTTGAAGTTGAGGGAAATGAAAAGGGAGTTAAAAGTTTTGAAGTTTTATATGAGACCACAGGAATGGATATTCGTTGCATTTGCAGTTTGTTCAATTACAAAGGATATCTATGTAGACATGCATTGAATGTTCTCAATTATAATGGTATTGAGGAAGTCCCATCTCGATACATCCTGCAAAGGTGGAAGAGGGATTTCAAGCAAAGGTGTAATCAATACCATGTATCTGGTAATGATGATACCTATAATCCTATGTCCTGGTATACTCATCTGTTTACCAATGCCCTTCCAGTGTTAGAAGTAGGGGCACAGTCACAGGAGCATTATATGATTGCTTTAAAAGAACTTGAGGAGTTGTTAGAGAAGTTTGATATAGTGGATAGTAACTTGCTGTAA 2007 0.3812 MEEVCLNNEPLFDESDEFDVEGNSSVVEHDLESLNSQPKNSPFPTVGLEFDSFEDVYNFYNIYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIKMVDSKRWRIVEVELQHNHHVSPQSKRFYKSHKKMILAARKSQPLPEPVTEVHTIKLYRTTVMDVSQNGYSNFEESNDTNFDKFKYLELREGDANAMYNYFCRMKLTNPNFFYLFDIDDDGGLKNVFWADSRSRVSYNYFNDTITIDTTCLANKYEIPLISFVGVNHHGHSVLLGCGFLGHESVDYFVWTFKAWLECMLGRPPQVIITDQCKPLQIAVAQVFPHARHCYSSQYIMQRVPEKLGGLQGYEAIRKHLYSAVYQSLKISEFETSWADMIKCYGLGENKWLQTLHKDRHLWVPVYLKDTIFIGLIPTKENEGLTAFFDGYVHKHTSFKEFLDKYDLALHRKHLKEAMADLESRQSSFELNTRCNFEVQLSKVYTKEIFKKFQFEVEGMYSCFNTRQVSVNGSIITYVVKERVEVEGNEKGVKSFEVLYETTGMDIRCICSLFNYKGYLCRHALNVLNYNGIEEVPSRYILQRWKRDFKQRCNQYHVSGNDDTYNPMSWYTHLFTNALPVLEVGAQSQEHYMIALKELEELLEKFDIVDSNLL. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04215 668 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Seca12g04215 668 Pfam SWIM zinc finger 559 583 IPR007527 GO:0008270
Seca12g04215 668 SMART 26again6 561 588 IPR006564 GO:0008270
Seca12g04215 668 Pfam MULE transposase domain 264 356 IPR018289 -
Seca12g04215 668 Pfam FAR1 DNA-binding domain 58 142 IPR004330 -
Seca12g04215 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 660 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04215 Seca-Chr12 115331406 115336441 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04215 MULE 1.9e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04215 K17604 - gmx:100811666 1218.37