Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04167 ATGCTCAAGTTGGATGGTGGTAGAAGGAAGAAGAGAGATTTATGGTCTGAAGCTGATGCTGGTGCTGGTGCTGGTGGAAACTCCATTTATGGCCTTAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCCGATGCCACTTTGGAACAGGTGGAGAATTTCTGCAAAGAATGTGGGAAAGGCTTTCCTTCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAGAAAGAGAAGAACAGTGGTGGTGATGAGAAGGAGAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTGTGCTCCAACACATCCAAGGAGATCCAAGAGAATGAGGTTCAAGTCTCTTACCCTTTCTAATCACTCCTCTTCTGTTGTTCTTCCTTTGGGGAATGGTTCTTCACCTGTGTCTGAGGTTGAGCAGGAACAAGAAGAGGTGGCTAGGTGCTTGATGCTGTTATCCAAAGATTCTGGTTTCAAGGGTCGTTTTGCTTCTGAATCTTCTGATAACAACTCAGTTGTTCTTGAGGCGAAATCATCATCTCTTGATACAAAGGTTGCTATGAGTTATGGTAACAACTTTGTCTCTAATGGTTTTGAATTTGCTGAGAAGAAGGTGCTGCTGAAGGGCACCAAGTTAAAGTCTGTCGTTGGGGTTGGTGTTTCTGAGAATTCAGATTCTAGATGTTTAAGATATGGTCCCAAAACCAAAAGGGTAGACTCAGATGTTTCACATGATGAGTTTAAGAGGCCAAAGATTGGAGATAAGTCAGGTTTTGAGGATTGCAATTTTGAGTTGAACAGAGGAAGAAGCAAATGCAGTGTTACTTTATTGAAGAAATTAGTCATTAAGGATTTTGATTGTGATAGAACAGATGGAAAGAGAGCCAACTATGATTCTCTTAGTCACAAATTTGTTGGCATTTCTAGCAAGAAGAGAACTAATGGTTCTACCAATGATGAAATCTATGAGAATGGTAGAAAAGGTTGGAAGTATGAGAAGGACAATGACTCTTATGATTCAACATATGAGAGTGATGAAAACAGTTCAGAGAGTGATTCATATCCTGTTCCCAGGTCTCATAATAGTAAGAGTCTCAATGGGAAAAAGTCCAGCAAGACCAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAGGGAACATGAGTGCCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCTTTAGGTGGTCACAAAAGATCCCATTTTATTGGAGGTTCTGAAGAAAACACTCTTGTGATCAAACAAAGTGCTCCTGTTGTTCCTTGCCTTATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1335 0.4067 MLKLDGGRRKKRDLWSEADAGAGAGGNSIYGLRENPKKTMRFVHSDATLEQVENFCKECGKGFPSLKALCGHMACHSEKEKNSGGDEKEKLVMDSQSDTETCAPTHPRRSKRMRFKSLTLSNHSSSVVLPLGNGSSPVSEVEQEQEEVARCLMLLSKDSGFKGRFASESSDNNSVVLEAKSSSLDTKVAMSYGNNFVSNGFEFAEKKVLLKGTKLKSVVGVGVSENSDSRCLRYGPKTKRVDSDVSHDEFKRPKIGDKSGFEDCNFELNRGRSKCSVTLLKKLVIKDFDCDRTDGKRANYDSLSHKFVGISSKKRTNGSTNDEIYENGRKGWKYEKDNDSYDSTYESDENSSESDSYPVPRSHNSKSLNGKKSSKTKKKKLKSKKSREHECPICYKIFKSGQALGGHKRSHFIGGSEENTLVIKQSAPVVPCLIDLNLPAPVDD. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04167 444 MobiDBLite consensus disorder prediction 368 385 - -
Seca12g04167 444 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 22 443 - -
Seca12g04167 444 MobiDBLite consensus disorder prediction 336 385 - -
Seca12g04167 444 MobiDBLite consensus disorder prediction 78 95 - -
Seca12g04167 444 Pfam C2H2-type zinc finger 389 411 - -
Seca12g04167 444 Pfam C2H2-type zinc finger 56 78 - -
Seca12g04167 444 SUPERFAMILY beta-beta-alpha zinc fingers 55 411 IPR036236 -
Seca12g04167 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 389 411 IPR013087 -
Seca12g04167 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Seca12g04167 444 MobiDBLite consensus disorder prediction 350 367 - -
Seca12g04167 444 ProSitePatterns Zinc finger C2H2 type domain signature. 391 411 IPR013087 -
Seca12g04167 444 MobiDBLite consensus disorder prediction 78 110 - -
Seca12g04167 444 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Seca12g04167 444 SMART c2h2final6 54 76 IPR013087 -
Seca12g04167 444 SMART c2h2final6 389 411 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04167 Seca-Chr12 114323976 114325340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04167 25 444 C2H2 Transcription Factor Family AT1G26610 42.058 3.65e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g04167 zf-C2H2_6 1.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04167 - - vun:114177115 460.685