Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04160 ATGATACATGAACTAACACATGATGACATTAGACGTCTGGAGTTCGGTTATGAGGGTGAGGCATATAGTTTTTATTCGGATTATGCCAAACAACGAGGGTTTGCTATGAGGAAAGATGATATTGAGCGAAATGAGAATGGTGATATTGTTAAGCGGTATTTAGTGTGTAATAAGGAGGGAACAAGGGACAAGAAACACTTGGAGAGAAGGGACAGAGTGAGGGAGGCGAGGCCAATTACTCGTGTGCAGTGCACAGCAAGGATGCGTGTTTACTTAGATATGAGGAGTGGGAAATGGAAGGTGTGTGCATTCCACGACGATCATAACCATGAGTTAACTCCTCCAACATATGTTCACATGATGCCAGCTTATAGACGATTGAATGAATCTGATAAAGCTCAAATTGATACCCTGCATGCAGCCGGTGTGAGAACTTGCCATATTATGAGTTTTATGATTGGACAGAAAGGGGGACATGGTGAATTAGGTTTCTGTAAAAAGGACATGTATAACCACATTGATAAACAGAAGAGGGCTAATATAGAGGATGGTGATGCATTTGCAGCGTTGTGTTATTTGCAGGGAAAGTATAACGGTGATCCACTAATGCATTGCATGTTCAGGACAACAGACGATGGCAGACTGCAGGACCTATTTTGGTGTGACGGTGCAAGTCGTGTTGATTATCAGTGTTTTGGAGATGTAATAGCATTTGACACGACTTATAAGAAAAACAAATATAACAAGCCTTTGGTTATTTTTTGCGGGTACAACCGCCATGAGCCCAGTGCCTTAGTTACAGATGGAGATGCAGCCATGCGAGAAGCTATCAGGGTTGTATTCCCAAGTGCAGTTCACAGACTTTGTTCCTGGCACATACACCAAAATGCCTGTGAGAATGTGAAGAATTCAAAATTTCTAGAGGAATTCAAGCGCATGATTTATGGCAAATTCACGGAGGATAGATTTGAAAGGGAGTGGACAAACATGGTTGATAAATTTGGATTATCTAACAACAGGTGGGTCCAGAAAATGTATGACATGAAGAGGTTATGGGCAAATTCATATATGGGAGACACATTTTATGGTGGTATTAGAACAACGTCTGTGTGTGAGGGGATTAATTCGTTCATTAAGAGGTATGTCCAAAATAGGAACAGCCTGGTGGACTTCCTTCACAACTTTGACAGGGCGTTAAAGGAGTATAGGCACAATGAATTGATTTCTGATTTTAAGTCATTTTACGGAGAACCTGTATTGACCACAGCTCTTTTTACCATTGAGGAATGTGCCTCCAAAGTTTTCACTAGGAAAAAGTTTTGGGAAGTTAAGTCTGAGATTGAGAGTGCGGCTGCGTACAATGTAGTGGATAGGGTTGTGACTGGTGAGACTGTGAGGTTGACAATGAATAAATTTTGCAAACCGGATTATGAGTATGATGTTGTATTAGATAAAAGTGAATTGAAGTTCAATTGTGAGTGTAGAATGTTTGAGTCATGTGGCATTCCCTGCCGTCACATTTTTTGTGCAATGAAGAATGAGCACGTGAAAACCATTCCAAGTAGCCTAATACTGAAGAGATGGACAAAATCAGCGAAGCCTGATTTCATGTCCAGTGAGCCCGTTGTGAGGTTAGATAAGGAGAAGGTTGACATGCTAAGGGAGGGAGGTATAGGTGCTGCATGTGACTATTTATCCCGTGTTGCTAAGAAACATGTGCATGATTACAAGTCCATTATGGATGACATATATAAACTCACTAAAAAAATTGAGAGTCGTAATAGCCAAAGTGAAAAGAAAAATAATGGGCGGGGTCAAATTGGTGATCCAGAGGTGGGGAAGACTAAAGGTGCACCAAGGAAGAGCAGAAGGATGACGAAAGGCAGAAGGTGTTCGAACTGTAGACGAAGAGGACACACTAAGAACAAATGTCCTGGATTGAGTCAACGGGATGTTTTAGGGGAAGCTGAAGACGATGAATCTTCGTGGGAGAGTGATGGTGCCATGGGAAATGATAAAGTAAGAAAATTTATTTGTGATTTGGGTTATGGTATTTTTTGA 2061 0.4115 MIHELTHDDIRRLEFGYEGEAYSFYSDYAKQRGFAMRKDDIERNENGDIVKRYLVCNKEGTRDKKHLERRDRVREARPITRVQCTARMRVYLDMRSGKWKVCAFHDDHNHELTPPTYVHMMPAYRRLNESDKAQIDTLHAAGVRTCHIMSFMIGQKGGHGELGFCKKDMYNHIDKQKRANIEDGDAFAALCYLQGKYNGDPLMHCMFRTTDDGRLQDLFWCDGASRVDYQCFGDVIAFDTTYKKNKYNKPLVIFCGYNRHEPSALVTDGDAAMREAIRVVFPSAVHRLCSWHIHQNACENVKNSKFLEEFKRMIYGKFTEDRFEREWTNMVDKFGLSNNRWVQKMYDMKRLWANSYMGDTFYGGIRTTSVCEGINSFIKRYVQNRNSLVDFLHNFDRALKEYRHNELISDFKSFYGEPVLTTALFTIEECASKVFTRKKFWEVKSEIESAAAYNVVDRVVTGETVRLTMNKFCKPDYEYDVVLDKSELKFNCECRMFESCGIPCRHIFCAMKNEHVKTIPSSLILKRWTKSAKPDFMSSEPVVRLDKEKVDMLREGGIGAACDYLSRVAKKHVHDYKSIMDDIYKLTKKIESRNSQSEKKNNGRGQIGDPEVGKTKGAPRKSRRMTKGRRCSNCRRRGHTKNKCPGLSQRDVLGEAEDDESSWESDGAMGNDKVRKFICDLGYGIF. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04160 686 MobiDBLite consensus disorder prediction 619 643 - -
Seca12g04160 686 Pfam FAR1 DNA-binding domain 23 113 IPR004330 -
Seca12g04160 686 Pfam SWIM zinc finger 479 507 IPR007527 GO:0008270
Seca12g04160 686 Pfam MULE transposase domain 260 296 IPR018289 -
Seca12g04160 686 ProSiteProfiles Zinc finger SWIM-type profile. 477 515 IPR007527 GO:0008270
Seca12g04160 686 ProSiteProfiles Zinc finger CCHC-type profile. 629 645 IPR001878 GO:0003676|GO:0008270
Seca12g04160 686 SMART 26again6 490 517 IPR006564 GO:0008270
Seca12g04160 686 MobiDBLite consensus disorder prediction 592 667 - -
Seca12g04160 686 SUPERFAMILY Retrovirus zinc finger-like domains 616 647 IPR036875 GO:0003676|GO:0008270
Seca12g04160 686 PANTHER OS01G0519700 PROTEIN 13 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04160 Seca-Chr12 114132110 114134267 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04160 FAR1 2.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04160 - - tpra:123910662 704.901