Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04126 ATGGTTGGGGGTGGAAATGGAGAGGGAGCTCGAGCACCACCGTGGACGGTGGCGCGTCCCAACATCAGCATCCCGCCACGCGCGTCGATGGAGAGTGGTGGGGCCCCAGTGGGGTTGAGTCCCGGTCCCATGACTCTGCTTTCGAACTTCTTTGGTGACAACGATGAGTGCAAGTCCTTCTCGGAGCTTCTCGCCGGCTCTATGGTGGAGCACGGCGAAGGTGCTCCCTCTGGCTTCTCTCCCATGGCCATGTTCACCGTTCCACCCGGGTTGAGCCCCGCTGGCTTCCTCCACTCACCTCCACCTCAGGGGAACTTTGGAATGACACATCAGCAGGCTCTAGCACAGGTTCCTGCTGCTACTTCCAGTACTGCACAACAGCTGATACCACCCTCATCCCTTGATTATCCTCACTCTGAACAAAGATTGCAGTCTTCTTCTGTCAACGTTGATAAGCCTAATGATGATGGCTACAATTGGAGGAAGTATGGGCAGAAACAGGTGAAAGGTTGTGAGTTCCCTAGGAGTTATTATACGTGCACTCATCCAAGTTGTCCCGTTAAGAAAAAGGTTGAACGTTCTCTTGATGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAATCATCAATGTCCTCATCCCAGCAAGCTCACAAAAGATAACCAAACTTCAAATCAAAATTCAAACATGCCAGGGAATCTTGAATCAATAAATTCTCACCCAATGTCTAAGGTGGATCCAGAATCTAGTCAGGCAACAGTTGAACATGTGTCAGGAACAAGTGATGGTGAGGAAGTAGGTGATCATGAAAATGAAGTACATGAAAAAAATGATGAGCCTGATCCCAAGAGAAGAAACACAGAAGTCAGGGTCCTGGATCATGCCTCATCACATAGGACTGTCTCAGAGCCTAGAATTATTGTGCAAACAACAAGTGAAGTGGATCTCTTAGAGGATGGATATAGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACAACCCCAGGTTGCAATGTTAGGAAACATGTTGAGAGGGTTTCAACAGATCCTAAAGCTGTCATGACAACATATGAAGGAAAACATAACCATGAAGTACCAGCTGCTAAGACTAATAGCCACACTCTTGCCAACAGTAGTGCATCACAGCTAAAATCACAAAATGCCATACCTGAGAAGCATAGTTTCAACAGCAGGGGTGTTGGGGGCAATGAGCAGCAGCCTGTAGCAGTAGCACGTCTAAGGTTGAAGGAAGAGCAGATAACATAG 1302 0.4747 MVGGGNGEGARAPPWTVARPNISIPPRASMESGGAPVGLSPGPMTLLSNFFGDNDECKSFSELLAGSMVEHGEGAPSGFSPMAMFTVPPGLSPAGFLHSPPPQGNFGMTHQQALAQVPAATSSTAQQLIPPSSLDYPHSEQRLQSSSVNVDKPNDDGYNWRKYGQKQVKGCEFPRSYYTCTHPSCPVKKKVERSLDGHVTAIIYKGEHNHQCPHPSKLTKDNQTSNQNSNMPGNLESINSHPMSKVDPESSQATVEHVSGTSDGEEVGDHENEVHEKNDEPDPKRRNTEVRVLDHASSHRTVSEPRIIVQTTSEVDLLEDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERVSTDPKAVMTTYEGKHNHEVPAAKTNSHTLANSSASQLKSQNAIPEKHSFNSRGVGGNEQQPVAVARLRLKEEQIT. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04126 433 MobiDBLite consensus disorder prediction 117 160 - -
Seca12g04126 433 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g04126 433 FunFam WRKY transcription factor 141 214 - -
Seca12g04126 433 Pfam WRKY DNA -binding domain 319 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 MobiDBLite consensus disorder prediction 385 415 - -
Seca12g04126 433 MobiDBLite consensus disorder prediction 262 288 - -
Seca12g04126 433 MobiDBLite consensus disorder prediction 207 288 - -
Seca12g04126 433 MobiDBLite consensus disorder prediction 117 153 - -
Seca12g04126 433 SUPERFAMILY WRKY DNA-binding domain 153 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 ProSiteProfiles WRKY domain profile. 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 MobiDBLite consensus disorder prediction 216 259 - -
Seca12g04126 433 SMART WRKY_cls 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 Gene3D WRKY domain 303 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g04126 433 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 120 400 IPR044810 GO:0003700
Seca12g04126 433 FunFam WRKY transcription factor 33 305 371 - -
Seca12g04126 433 MobiDBLite consensus disorder prediction 385 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04126 Seca-Chr12 112811517 112816209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04126 17 433 WRKY Transcription Factor Family AT2G03340 52.418 4.63e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g04126 WRKY 4.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04126 - - gmx:100799335 585.104