Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04112 ATGCAGGGTCGTTTGTCTGCTTGGCTAGTCAAACATGGACTAGTTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAAACTTTACAAATAAAGCCCGAGGACTGGCATTCCATTGCTGTAATTTTATATGCATATGGTTACAATTATTTACGTTCCCAATGTGCCTATGATGTAGCACCAGGAGGAATGTTAGCTAGTGTGTATCATCTTACGCGAATAGAGTATGGTATTTATCAACCAGAAGAGGTATGCATAAAAGTATTTGTTCCAAGGAACAATCCTGGAATTCCTTCTATTTTTTGGGTTTGGAAAAGTGCAGATTTTCAAGAAAGGGAATCCTATGATATGTTAGGAATCTCTTATGATAATCATCCACATCTGAAACGCATTTTAATGCCCGAAAGTTGGATAGGATGGCCTTTGCAACGACAATTGATTAAATACGTTCGTATTGCTGGAAAAGCGAAAGGGTCAACCGGTCAGGTTTTACTACAATTACTTGAATTGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCATAGACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGTTGCAAACCTCAAGATATTATTACAGCGAAGGATGACCAAAAATCGATAACTCTGATTAAAAATTCTATTGAATCAGCCCCCTGTGAGGAGTTGCCAAACCATTTGACTCTTCACCCATTCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGATTGGTTTGAAAATTAATGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTTAA 849 0.3675 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYAYGYNYLRSQCAYDVAPGGMLASVYHLTRIEYGIYQPEEVCIKVFVPRNNPGIPSIFWVWKSADFQERESYDMLGISYDNHPHLKRILMPESWIGWPLQRQLIKYVRIAGKAKGSTGQVLLQLLELRLDNILFRLGMASTIPQARQLVNHRHVLVNGRIVDIPSYRCKPQDIITAKDDQKSITLIKNSIESAPCEELPNHLTLHPFQYKGLVNQIIDSKWIGLKINELLVVEYYSRQT. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04112 282 CDD S4 173 230 - -
Seca12g04112 282 Gene3D - 171 260 IPR036986 GO:0003723
Seca12g04112 282 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 143 280 - -
Seca12g04112 282 FunFam NAD(P)H-quinone oxidoreductase subunit J, chloroplastic 16 130 - -
Seca12g04112 282 ProSiteProfiles S4 RNA-binding domain profile. 170 231 - -
Seca12g04112 282 ProSitePatterns Ribosomal protein S4 signature. 168 192 IPR018079 GO:0019843
Seca12g04112 282 SUPERFAMILY Nqo5-like 6 145 IPR037232 -
Seca12g04112 282 Gene3D NADH:ubiquinone oxidoreductase, 30kDa subunit 16 130 IPR037232 -
Seca12g04112 282 Hamap 30S ribosomal protein S4 [rpsD]. 2 280 IPR005709 GO:0003735|GO:0006412|GO:0015935
Seca12g04112 282 FunFam 30S ribosomal protein S4, chloroplastic 169 265 - -
Seca12g04112 282 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 1 151 - -
Seca12g04112 282 Pfam Respiratory-chain NADH dehydrogenase, 30 Kd subunit 30 145 IPR001268 GO:0008137
Seca12g04112 282 SMART s4_6 170 234 IPR002942 GO:0003723
Seca12g04112 282 ProSitePatterns Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 111 132 IPR020396 GO:0016651
Seca12g04112 282 SUPERFAMILY Alpha-L RNA-binding motif 139 280 - -
Seca12g04112 282 Pfam S4 domain 171 217 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04112 Seca-Chr12 111629116 111633763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04112 167 209 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 46.512 6.05e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04112 K05581 - soe:2715595 290.812