Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04105 ATGGGGAACAAGAGAAAAGGAAGGGAAGGAGATGGAGGGGAAAACAACAATGAAGAAGGGAACATTGAATGGAAACAGATAAGGGAAGAGGCAGCATCAGTGGCTGCTGCTCTACTTGGTGCTAGAAGAGCAAGAAAACGTTACATTGGAGTGCGTCAAAGGCCTTCAGGGAGATGGGTTGCTGAAATCAAAGACACCATACAGAACATTAGATTATGGTTAGGCACATATGACACTGCTGAAGAGGCTGCAAGAGCTTATGATGAGGCTGCACGTTTACTTCGTGGTGCTAACACTCGCACAAATTTCTTTCCTTGTCAATCTTCTCATTTTACTCCAGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACCTTGCTTCTTCTTGTATGGTCCCTGCTCCTTTTCCTAGTGACCACAATGAGCAAGAAACCAAGGCAGAACAAATCGAACCTCAATTTTTTGACCAAATAGAAGAACCCCATTTTGAAAATTTTCTAGGAAGTTATGGTGGTGCTAGTTATTCTCTTACTGAGATAACTACTTGTGACTATAGTAGTGGAACTAAGGAAGGAAATTTTAACCAAGAGGGTAGCAGTAGCAGAGAGGATTTTAGATACCATTGTGCTAACAGTGTTGTTGATGATGGAAACAATCAGATTGTGCGGGGAAAAGGAGAATCTGAAGACTATGATGTTGGGCTCATTGACTTTCAGTTTTTGGATTCTGTTGGATCATTGAGTTACTCTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGGCCAATAGAGGAAGAGAAATACAATATGGATGATTCACCTTTAGTTAGAGAAACTTTTAGGATGAAGTATGAACGTAAATTCTCAGCTTGTCTTTACACCTTGAGTGGGGTGTCTGAGTGTTTGAGGTTACAAGTTGGACCTGAAAATGGAAAGGAATTGGAAAATTTTTTAGGATGA 978 0.4121 MGNKRKGREGDGGENNNEEGNIEWKQIREEAASVAAALLGARRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEEAARAYDEAARLLRGANTRTNFFPCQSSHFTPALPPKIAKLLLLRLKARNLASSCMVPAPFPSDHNEQETKAEQIEPQFFDQIEEPHFENFLGSYGGASYSLTEITTCDYSSGTKEGNFNQEGSSSREDFRYHCANSVVDDGNNQIVRGKGESEDYDVGLIDFQFLDSVGSLSYSSPFEIAEEMVGPIEEEKYNMDDSPLVRETFRMKYERKFSACLYTLSGVSECLRLQVGPENGKELENFLG. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04105 325 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Seca12g04105 325 MobiDBLite consensus disorder prediction 1 15 - -
Seca12g04105 325 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 208 - -
Seca12g04105 325 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Seca12g04105 325 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g04105 325 SUPERFAMILY DNA-binding domain 47 103 IPR016177 GO:0003677
Seca12g04105 325 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Seca12g04105 325 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Seca12g04105 325 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Seca12g04105 325 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Seca12g04105 325 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Seca12g04105 325 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04105 Seca-Chr12 110659404 110660381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04105 45 132 AP2-EREBP Transcription Factor Family AT5G19790 62.500 3.21e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g04105 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04105 K09286 - gmx:100793940 350.903