Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04102 ATGAGTTCCGGCAGCAGCACGGAGAAGGAGAAGGAAAAGGAGAAGGCAAGGGTGAGCCGCACATCGCTGATACTGTGGCACGCTCATCAAAACGACGCCGCAGCGGTTCGGAAGCTTCTTCAAGAGGATCCCTCGCTGGTGAACGCCAGAGATTACGACAATCGCACTCCGCTCCACGTGGCATCCCTCCACGGCTGGATCGACGTCGCCAATTGCTTAATTGAATTCGGCGCCGATGTCAACGCCCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAAGGAGCTAAAAGGACTGATATGATCGAGCTTTTGAAATCACATGGAGGCTTGTCTTTTGGCCAAAACGGAAGCCATTTTGAACCCAGACCTGTTCCGCCCCCGTTGCCTAACAAGTGTGATTGGGAAATCGACCCTTCCGAATTGGACTTCACAAATGCGTTGCGTGTTGGAAAGGGATCTTTCGGTGAGATTTTGAAAGCCCATTGGCGTGGAACACCAGTTGCTGTCAAACGCATTCTTCCATCTCTTTTAGAAGATAGATTGGTCATTCAGGACTTTAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCCAACATAGTTCAGTTTCTTGGAGCTGTTACTGAGAAGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTGCTCTTAGTCCTTCTACAGCTATCAACTTTTCCATGGACATTGCCAGAGGAATGGCTTATCTTCACAATGAACCAAATGTTATAATACACAGGGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCTGACCATTTAAAAGTTGGAGATTTCGGATTGAGTAAGCTTATCACTGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACGGGGAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTATGAACCCTATGAAGGAGCAAAACATGCTGCTGAAGGACACAGGCCTACTTTTTGGGCAAAGGGTTATGTCCCTGAATTGCAAGAGTTAATACAGCAATGTTGGGCTACTGACATGAATAAAAGACCTTCTTTCCTGGAGATCCTTAAACGGCTTGAAAAGATCAAGGAAAATTTACCTTCAGATCATCACTGGCACTTGTTCAAATCATAA 1266 0.4518 MSSGSSTEKEKEKEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVNARDYDNRTPLHVASLHGWIDVANCLIEFGADVNAQDRWKNTPLADAEGAKRTDMIELLKSHGGLSFGQNGSHFEPRPVPPPLPNKCDWEIDPSELDFTNALRVGKGSFGEILKAHWRGTPVAVKRILPSLLEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKEKGALSPSTAINFSMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFASYEPYEGAKHAAEGHRPTFWAKGYVPELQELIQQCWATDMNKRPSFLEILKRLEKIKENLPSDHHWHLFKS. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04102 421 SUPERFAMILY Protein kinase-like (PK-like) 124 416 IPR011009 -
Seca12g04102 421 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Seca12g04102 421 SUPERFAMILY Ankyrin repeat 22 110 IPR036770 -
Seca12g04102 421 Gene3D Transferase(Phosphotransferase) domain 1 225 417 - -
Seca12g04102 421 ProSitePatterns Protein kinases ATP-binding region signature. 151 172 IPR017441 GO:0005524
Seca12g04102 421 SMART ANK_2a 86 116 IPR002110 GO:0005515
Seca12g04102 421 SMART ANK_2a 53 82 IPR002110 GO:0005515
Seca12g04102 421 CDD STKc_MAP3K-like 151 403 - -
Seca12g04102 421 PIRSF ILK 1 421 - -
Seca12g04102 421 PRINTS Tyrosine kinase catalytic domain signature 374 396 IPR001245 GO:0004672|GO:0006468
Seca12g04102 421 PRINTS Tyrosine kinase catalytic domain signature 258 276 IPR001245 GO:0004672|GO:0006468
Seca12g04102 421 PRINTS Tyrosine kinase catalytic domain signature 220 233 IPR001245 GO:0004672|GO:0006468
Seca12g04102 421 ProSiteProfiles Protein kinase domain profile. 145 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04102 421 Gene3D Phosphorylase Kinase; domain 1 130 224 - -
Seca12g04102 421 FunFam serine/threonine-protein kinase STY8 1 119 - -
Seca12g04102 421 FunFam serine/threonine-protein kinase STY46-like 138 224 - -
Seca12g04102 421 SMART serkin_6 145 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04102 421 Gene3D - 2 119 IPR036770 -
Seca12g04102 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Seca12g04102 421 Pfam Ankyrin repeats (many copies) 39 91 IPR002110 GO:0005515
Seca12g04102 421 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Seca12g04102 421 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 408 - -
Seca12g04102 421 Pfam Protein tyrosine and serine/threonine kinase 150 403 IPR001245 GO:0004672|GO:0006468
Seca12g04102 421 FunFam Integrin-linked protein kinase family 224 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04102 Seca-Chr12 110539029 110548226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04102 2 421 MAP Kinase Kinase Kinase AT1G14000 84.286 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Seca12g04102 PK_Tyr_Ser-Thr 9.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04102 - - gmx:100793237 783.867